YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56207615
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIRLALIVL LFITMVSLGC TMDISKIKDH LMKPKGVVIA VGAQYGIMPF TAFCLAKLFR  60
   61 LSPMESLSVL ICGCCPGGNL SNIFALALQG DMNLSIVMTA CSTVLALAMM PLLLYLYSWG 120
  121 FSNLVDFVPF TGIIFSLILI LVPCGIGILL NYRVPQYSKI ITHSCRRTVS MEVGCQNIQL 180
  181 CTTILKVAFP AEIIGRLYFF PVIYIVFQIV EALIFIFLFR CHQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.59
Transmembrane Helix	5	25	0.81
Cytoplasmic	26	35	0.56
Transmembrane Helix	36	59	0.84
Non-Cytoplasmic	60	65	0.56
Transmembrane Helix	66	88	0.85
Cytoplasmic	89	95	0.56
Transmembrane Helix	96	117	0.93
Non-Cytoplasmic	118	126	0.61
Transmembrane Helix	127	152	0.85
Cytoplasmic	153	172	0.63
Transmembrane Helix	173	189	0.32
Non-Cytoplasmic	190	196	0.52
Transmembrane Helix	197	219	0.90
Cytoplasmic	220	223	0.52