YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57834123, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFAASPSLS SLAAASSSSS AASDAAVAIS SSSSSPSNPS RELSPRLFSP LPPKPHSLSC  60
   61 SGTQAPRATT GDGSGAAGDR GSGSGGNSGK GGGGGSGSGG GDDDDDYEEA EFGPLLGFDE 120
  121 VLRLAAARGV SLPADMMEAA KDAGIREVLL LRYFDLQAGP WPLAAMIRAF SMLRNRMLAD 180
  181 PSFLFKVGTE VVIDSCCATF AEVQKRGEDF WAEFELYAAD LLVGVVVDIA LVGLLAPYVR 240
  241 FGKASASTGP FGRFNRMAGS LPSSVFEAER PGCRFTVQQR IGTFFYKGVL YGSVGFVCGI 300
  301 IGQGIANMIM TAKRSVKKSD EDIPVPPLIK SAALWGVFLA VSSNTRYQII NGLERVVETS 360
  361 PIAKRVPPVA MAFTVGVRFA NNIYGGMQFV DWARWSGVQ

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	287	0.90
Transmembrane Helix	288	309	0.81
Cytoplasmic	310	399	0.58