YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57336888
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKEEDVRL GANKFNERQP LGTAAQSQDD KDYKEPPPAP LFEPGELTSW SFYRAGIAEF  60
   61 MATFLFLYIT VLTVMGVVKD PTKCTTVGIQ GIAWAFGGMI FALVYCTAGI SGGHINPAVT 120
  121 FGLFLARKLS LTRAVFYMLM QCLGAICGAG VVKGFYGKTN YELHNGGANM VAHGYTKGDG 180
  181 LGAEIVGTFI LVYTVFSATD AKRSARDSHV PILAPLPIGF AVFLVHLATI PITGTGINPA 240
  241 RSLGAAIIFN KDSAWDDHWI FWVGPFIGAA LAALYHRL

Type	Start	End	Confidence
Cytoplasmic	1	54	0.91
Transmembrane Helix	55	77	0.83
Non-Cytoplasmic	78	91	0.84
Transmembrane Helix	92	115	0.85
Cytoplasmic	116	133	0.75
Transmembrane Helix	134	156	0.91
Non-Cytoplasmic	157	179	0.89
Transmembrane Helix	180	199	0.90
Cytoplasmic	200	209	0.89
Transmembrane Helix	210	230	0.89
Non-Cytoplasmic	231	257	0.86
Transmembrane Helix	258	276	0.95
Cytoplasmic	277	278	0.85