YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57283315
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.84
Transmembrane Helix	65	88	0.88
Non-Cytoplasmic	89	99	0.76
Transmembrane Helix	100	119	0.69
Cytoplasmic	120	128	0.44
Transmembrane Helix	129	148	0.89
Non-Cytoplasmic	149	153	0.46
Transmembrane Helix	154	176	0.84
Cytoplasmic	177	183	0.50
Transmembrane Helix	184	206	0.74
Non-Cytoplasmic	207	222	0.43
Transmembrane Helix	223	246	0.85
Cytoplasmic	247	270	0.45
Transmembrane Helix	271	290	0.45
Non-Cytoplasmic	291	313	0.74
Transmembrane Helix	314	335	0.84
Cytoplasmic	336	351	0.81
Transmembrane Helix	352	372	0.93
Non-Cytoplasmic	373	377	0.78
Transmembrane Helix	378	400	0.92
Cytoplasmic	401	407	0.72
Transmembrane Helix	408	431	0.88
Non-Cytoplasmic	432	439	0.73
Transmembrane Helix	440	461	0.93
Cytoplasmic	462	530	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVEGSPGS SMHGVTGREQ SFAFSVASPT VPTDTTAKFA LPVDSEHKAK VFKIFSFANP  60
   61 HMRTFHLSWI SFFTCFVSTF AAAPLVPIIR DNLNLTKSDI GNAGVASVSG SIFSRLVMGA 120
  121 VCDLLGPRYG CAFLIMLSAP TVFCMSFVDS AGGYLAVRFM IGFSLATFVS CQYWMSTMFN 180
  181 SKIIGLVNGT AAGWGNMGGG ATQLVMPLVY ELIKRAGSTS FSAWRIAFFV PGWLHVIMGI 240
  241 LVLNLGQDLP DGNLGALKKK GDVAKDKFSK VLWYAVTNYR TWIFVLLYGY SMGVELSTDN 300
  301 VIAEYFYNRF DLKLHTAGVI AATFGMANLV ARPFGGYFSD VAARYFGMRG RLWVLWILQT 360
  361 LGGVFCTWLG RANSLPLAVT AMILFSIGAQ AACGATFGII PFISRRSLGI ISGLTGAGGN 420
  421 FGSGLTQLVF FSSSSLSTAA GLSWMGVMIC GCTLPVTLVY FPQWGGMFFP PSKDVVKSTE 480
  481 ESYYASEWDE DEKQRGMHQK SLKFAENSRS ERGKRIASAP TPPSTTPNRV