YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYB_PSEPE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.75
Transmembrane Helix	29	53	0.85
Non-Cytoplasmic	54	81	0.68
Transmembrane Helix	82	104	0.85
Cytoplasmic	105	112	0.63
Transmembrane Helix	113	135	0.90
Non-Cytoplasmic	136	142	0.56
Transmembrane Helix	143	166	0.77
Cytoplasmic	167	177	0.55
Transmembrane Helix	178	200	0.93
Non-Cytoplasmic	201	228	0.57
Transmembrane Helix	229	247	0.88
Cytoplasmic	248	266	0.49
Transmembrane Helix	267	281	0.30
Non-Cytoplasmic	282	287	0.52
Transmembrane Helix	288	309	0.89
Cytoplasmic	310	319	0.67
Transmembrane Helix	320	340	0.87
Non-Cytoplasmic	341	347	0.69
Transmembrane Helix	348	372	0.84
Cytoplasmic	373	381	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNLRKTHPL MKILNHSFID LPAPSNITAW WNFGSLLGVC LVIQILTGLF LAMHYTSDTT  60
   61 TAFSSVAHIC RDVNYGWLIR NLHANGASMF FMCLFLHVGR GIYYGSYLYK ETWNIGVILL 120
  121 LVVMATAFVG YVLPWGQMSF WGATVITNLL SAIPYIGTTL VEWIWGGFSV DKATLTRFFA 180
  181 FHFILPFIIV ALVIVHLLFL HETGSNNPSG INPDSDKIPF HPYYTIKDIL GLMFMILTLL 240
  241 LLTLFSPDML GDPDNFSPAN PLSTPPHIKP EWYFLFAYAI LRSIPNKLGG VLALLASILI 300
  301 LLIIPLLHTS KQRSLMFRPI SQTLFWLLTA NLLTLTWIGG QPVEEPYIII GQVASMTYFL 360
  361 LILILMPAAG LFENFMLKPK W