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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: UBP11_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVAADPAA AAVPASAEDR ETQPEAMPDL DQQWRQIGNG RERPLRAGES WFLVEKHWYK  60
   61 QWEAYVKGGD QDASTFPGSI NNSGLFEDQI SWHLRERLVE GDDYVLLPAP AWNYLVSWYG 120
  121 LKDDQPPIER KVIELPGIRK VEVYPIELLL VQHSDMETAL TIQFSYSDSV DLVLQTAREQ 180
  181 FLVEPQEDTR LWTKNSEGSL DRLCNTQITL LDACLETGQL VIMETRNKDG TWPSAQLCGM 240
  241 NNMPDEDEDF QGQPGICGLT NLGNTCFMNS ALQCLSNVPQ LTEYFLNNRY LEELNFRNPL 300
  301 GMKGELAEAY ADLVKQTWSG YHRSIVPNVF KNKVGHFASQ FLGYQQHDSQ ELLSFLLDGL 360
  361 HEDLNRVKKK EYVELCNGAG RPDLEVAQEA WQNHKRRNDS VIVDTFHGLF KSTLVCPDCG 420
  421 NVSVTFDPFC YLSVPLPVCS RRVLEVFFVP MDPRRKPEQH RVVVPKKGNI SDLCVALSTH 480
  481 TSVAPDKMIV ADVFSHRFYK LYQLEDPLSG ILDRDDIFVY EVTGRIEPVE GSRDDIVVPV 540
  541 YLRERTPSRD YNNSYYGLIL FGHPLLVSVP RDRFSWEGLY NILMYRLSRY VTKPTSDDDD 600
  601 GDEKGDENED EDVEDDSSSE EEKEEMSGPT DNDGTQESEQ EQAGTSSGVT GRCPSLLDNS 660
  661 LHTSQWPPRR RRKQLFTLQT VNSNGTSDRT TSPEEAQTQP YIAMDWEPEM KRRYYDEVEA 720
  721 EGYVKHDCVG YMLKKNPVQL KECIKLFTTV ETLEKENPWY CSSCKQHQLA TKKLDLWMLP 780
  781 EVLIIHLKRF SFSKFSREKL DTLVQFPIRD LDFSEFVIKP KNESAPDLYK YDLIAVSNHY 840
  841 GGMRDGHYTT FACNKDSGQW HYFDDNSVSP VNENQIESKA AYVLFYQRQD VGRRQSQTAS 900
  901 SETPTSPASS STPNSDIMDV N

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle