YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61845103
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVLTNLRGS RAATASQEGL PVSDGSPSNS TQVSIFKMKW SNFLPIFVAL VVIAEIAFLG  60
   61 RLDMAKNADL VDSWADSFFY RSTISADMVE SDDFGLETVN MDKTNGTSES DSCEEWLEKE 120
  121 DAVVYSRDFD KDPVLVAGAE KEWNTCGVEC QFGFNPSKKP DAGFGLPQQG GTASVLRSME 180
  181 SASYYAENNI AHARRGYDVV MTTSLSSDVP VGYFSWAEYD IMAPVQPKTE KALAAAFISN 240
  241 CGARNFRLQA LDGLERLNIN IDSYGNCHRN HDGRVDKVKT LKRYKFSLAF ENSNEEDYVT 300
  301 EKFFQSLVAG TIPVVVGAPN IQDFAPAPNS ILHIRKLEDV DSIAKTMKYL GENPDAYNQS 360
  361 LRWKYEGPSD SFKALVDMAA VHSSCRLCIH LATMIREKEE NSPGFKRRPC RCTKDLETVY 420
  421 HLYVRERGRF QMESIFLRSG NLTVNALEAA VLKKFKSLKH VPIWKQERPE SIRGGDDFKV 480
  481 YRVYPVGMTQ RQALYSYKFN TDDDFKNHLE VNPCAKFEVI FV

Type	Start	End	Confidence
Cytoplasmic	1	39	0.64
Transmembrane Helix	40	60	0.61
Non-Cytoplasmic	61	522	0.96