YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56753369
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQPATQQPM SELELLRMQM NAKTDETLES TRNMVRMCDE STKVGAQTLG NLESQGQQLR  60
   61 GIDSNMDTIR EDLHEAQHNL DELEKCCGLC VLPWRKVKPD TRSPKYPSSR NGYPTGTSNN 120
  121 YSNPYQPRQG LQQQQYQQQT GPFINRITND DREDEMEQNL QQVSGMVSQL HTMATDMNQE 180
  181 ITTHNQIIDR INQKAEVNQS ELSYAQKKAD KFLGQPSKPN QNNSILPIKY IINCCENVVE 240
  241 IIAMLVIIQI FNCFTSVSCK QCFSIHSMFM YLSVIVLITH LSAFVTTIIV SCVYVYCHFV 300
  301 DSLLIV

Type	Start	End	Confidence
Cytoplasmic	1	270	0.54
Transmembrane Helix	271	297	0.82
Non-Cytoplasmic	298	306	0.57