YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71834416, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLAVFFGCA FIAFGPAFAL FVFTVAKDPL RVIILIAGAF FWLLSLLLSS LVWFIAVKAS  60
   61 NSQDPSLPRG LLIFGVFFSV LLQEVFRFAY YRLLRKATEG LAAISDDASS AISVRQMAYV 120
  121 AGLGFGVMRG AFSMINILSD SLGPGTVGIF GDSQYYFITA ALMTLALTLL HTFWGVLFFE 180
  181 GCEKSSWWVI AVVVSLHLLV AGLSLLNPLY EGSLPPVYCI TLLMGIWAFF SSGGSLQNLS 240
  241 ALCTRRKVEA ESS

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.98
Transmembrane Helix	4	25	0.91
Cytoplasmic	26	32	0.85
Transmembrane Helix	33	57	0.90
Non-Cytoplasmic	58	69	0.85
Transmembrane Helix	70	91	0.88
Cytoplasmic	92	116	0.92
Transmembrane Helix	117	138	0.86
Non-Cytoplasmic	139	155	0.89
Transmembrane Helix	156	178	0.92
Cytoplasmic	179	186	0.86
Transmembrane Helix	187	206	0.97
Non-Cytoplasmic	207	216	0.74
Transmembrane Helix	217	236	0.91
Cytoplasmic	237	253	0.85