YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66910325, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.94
Transmembrane Helix	11	32	0.90
Non-Cytoplasmic	33	68	0.90
Transmembrane Helix	69	89	0.93
Cytoplasmic	90	98	0.80
Transmembrane Helix	99	117	0.96
Non-Cytoplasmic	118	128	0.75
Transmembrane Helix	129	152	0.85
Cytoplasmic	153	162	0.72
Transmembrane Helix	163	185	0.89
Non-Cytoplasmic	186	191	0.85
Transmembrane Helix	192	213	0.94
Cytoplasmic	214	272	0.93
Transmembrane Helix	273	294	0.92
Non-Cytoplasmic	295	310	0.82
Transmembrane Helix	311	328	0.92
Cytoplasmic	329	342	0.74
Transmembrane Helix	343	362	0.93
Non-Cytoplasmic	363	378	0.79
Transmembrane Helix	379	401	0.92
Cytoplasmic	402	413	0.83
Transmembrane Helix	414	436	0.91
Non-Cytoplasmic	437	440	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAVNAPRDR YNAVWIIFFI LGLGTLLPWN FFMTATLYFT KRLEETNGGL NQTANTTEIR  60
   61 SVLQSKFNNV MTLCAMVPLL IFTCLNSFIH QRIPQKLRIS GSLSVILVVF LITAVLVKVE 120
  121 MEPLPFFTLT MIKIICINSF GAILQGSLFG LAGMLPASYT TPIMSGQGLA GAFAAFSMIC 180
  181 AIASGSELED SAFGYFITAC VVILLAIVSY LALPRMEFFQ YYSESNRSRS STDEENKMDL 240
  241 LKPEGQAEKR PVLSLTEEES KPTVSVFAIF KQIWVMALSV CFVFIITIGI FPAVTVEVQS 300
  301 TIPDRGAWEK YFIPVSCFLL FNVMDWVGRS LTAVCMWPGK DSIWLPILVI ARVVFVPLFI 360
  361 LCNVQPRSFL PVVFSHDAWY IIFMIFFSFS NGYLASLCMC FGPKKVSQHE AETAGAIMAF 420
  421 FLSLGLAVGA ALSFGFRNMI