YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DGAT2_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTILAAYSG VKKGSGSSIL SALHDLPTVP WLTRSKMVKH LQVISVLQFI MTFLTMGIAC  60
   61 SLLLMYMFCT DFWVISVLYV AWLIYDWNTP GQGGRRSTWV RDWTVWKYMR DYFPIRLIKT 120
  121 HNLLPSRNYI FGYHPHGILC FGAFCNFGTE ATGFTKVFPG IKPSLATLAG NFRLPMFREY 180
  181 LMCGGICPVN RNSIDYLLSS NGTGNAVVIV IGGAAESLDC APGRNSVMLK KRKGFVKLAL 240
  241 KQGADLVPVY SFGENEVYKQ LIFEEGSWWR TIQRKLQKFL GFAPCLFHGC GLFFPESWGL 300
  301 VPYCKPITTV VGEPITVPKI EEPTQDVIDM YHAMYIRSLK SLFDNYKTRF GLNESDTLII 360
  361 H

Type	Start	End	Confidence
Cytoplasmic	1	43	0.91
Transmembrane Helix	44	66	0.87
Non-Cytoplasmic	67	71	0.54
Transmembrane Helix	72	89	0.63
Cytoplasmic	90	278	0.68
Transmembrane Helix	279	298	0.48
Non-Cytoplasmic	299	361	0.67