YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56403857\|emb\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGDRLENKT SVSVASWSSL NARMDNRFAT AFVIACVLSL ISTIYMAASI GTDFWYEYRS  60
   61 PVQENSSDLN KSIWDEFISD EADEKTYNDA LFRYNGTVGL WRRCITIPKN MHWYSSPERT 120
  121 ESFDVVTKCV SFTLTEQFME KFVDPGNHNS GIDLLRTYLW RCQFLLPFVS LGLMCFGALI 180
  181 GLCACICRSL YPTIATGILH LLAGLCTLGS VSCYVAGIEL LHQKLELPDN VSGEFGWSFC 240
  241 LACVSAPLQF MASALFIWAA HTNRKEYTLM KAYRVA

Type	Start	End	Confidence
Cytoplasmic	1	27	0.96
Transmembrane Helix	28	48	0.95
Non-Cytoplasmic	49	163	0.97
Transmembrane Helix	164	187	0.90
Cytoplasmic	188	196	0.79
Transmembrane Helix	197	218	0.94
Non-Cytoplasmic	219	234	0.92
Transmembrane Helix	235	260	0.89
Cytoplasmic	261	276	0.95