YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56208591
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.89
Transmembrane Helix	9	28	0.86
Non-Cytoplasmic	29	63	0.90
Transmembrane Helix	64	85	0.93
Cytoplasmic	86	93	0.77
Transmembrane Helix	94	111	0.97
Non-Cytoplasmic	112	118	0.77
Transmembrane Helix	119	139	0.92
Cytoplasmic	140	144	0.76
Transmembrane Helix	145	163	0.86
Non-Cytoplasmic	164	171	0.63
Transmembrane Helix	172	196	0.85
Cytoplasmic	197	205	0.86
Transmembrane Helix	206	228	0.89
Non-Cytoplasmic	229	264	0.90
Transmembrane Helix	265	287	0.79
Cytoplasmic	288	294	0.75
Transmembrane Helix	295	310	0.95
Non-Cytoplasmic	311	315	0.87
Transmembrane Helix	316	336	0.94
Cytoplasmic	337	346	0.77
Transmembrane Helix	347	365	0.68
Non-Cytoplasmic	366	498	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKEAVNESCL LIFMISISLL HLFTCPYTKV EESFNLQAIH DILYHRFDFE KYDHHEFPGV  60
   61 VPRTFLGPLV ISALSAPMTC VLVLFQAPKF YTQILVRGVL GLCVILSLWL MQKEVRRQFG 120
  121 SLVASLFCFI CTTQFHLMFY ITRTLPNVFA LPLVLLAFTS WLAQRHGAFI WLSALAAIVF 180
  181 RSELCLFFGL MLLMSLLNRK LNFGQLLYHA IPAGFVSLGL TIMFDSLFWN KLLWPEGQVL 240
  241 WYNTVLNKSS NWGISFCKML TSPFLWYFYS ALPRALASTI LFIPLGLLDR RTRKLLVVSI 300
  301 GFILLYSLLP HKELRFIIYT FPVFNVIGAC GCSFILKNYQ KSRIYKIGSI VVVGHLMLNA 360
  361 TYTSISLYVS HHNYPGGKAM QELHRLMPTT ADVSLHIDVL AAQTGVSRFL ELNSNWRYDK 420
  421 KEDLTVEDPV MKTYSHLLME VNATKILLLK DSHKPLVFIT GYQSLTFEMF HFPPLKIQLN 480
  481 KKLVLLERQS NKVNGGLN