YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55963448
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDDVSVLE VVTVVGRAVC AGAALTAALY LIRRVCLIMA WKSGGASHAE LVNNLRKNGI  60
   61 IKSDRVYEVM LATDRSHFSR CNPYMDSPQS IGYQATISAP HMHAYALELL HDHLYEGAKA 120
  121 LDVGSGSGIL SVCFSRMVGP TGKVIGIDHI KELVEDSIAN VKKDDPSLIT SGRIKLIVGD 180
  181 GRMGFTEEAP YDAIHVGAAA PTVPQALLDQ LKPGGRLILP VGPAGGNQML EQYDKLEDGS 240
  241 TKMKPLMGVI YVPLTDKDKQ WSRDEL

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.83
Transmembrane Helix	13	32	0.64
Cytoplasmic	33	266	0.59