YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56207904
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAELIIALL STVGNLLVCV AVGLNRKLQT VTNYFLVSLA VADICVGALA IPCAIMTDLG  60
   61 IPRHNLYLCL LMLSVLIMLT QSSIFSLLAV AVERYVAIFM PFQYHRLMTP RNAVLILCVT 120
  121 WTLAFLIGLV PLMGWHKPPP ESGYCFFVFV VDMTYMVYFN FFACVLAPLV VMFLIYAQIF 180
  181 VTVKRQMRRI AAERGGAGNT EGTAKMKKEM KMATSLFLVL FLFTSCWIPL HIINCFLLLC 240
  241 PSCPVPLPLL LTAIILSHAN SAVNPFLYAY KMKTFRNAFK S

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.90
Transmembrane Helix	5	24	0.89
Cytoplasmic	25	33	0.80
Transmembrane Helix	34	56	0.91
Non-Cytoplasmic	57	67	0.82
Transmembrane Helix	68	92	0.89
Cytoplasmic	93	112	0.89
Transmembrane Helix	113	134	0.94
Non-Cytoplasmic	135	156	0.92
Transmembrane Helix	157	180	0.93
Cytoplasmic	181	213	0.96
Transmembrane Helix	214	233	0.94
Non-Cytoplasmic	234	246	0.71
Transmembrane Helix	247	270	0.86
Cytoplasmic	271	281	0.96