YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56207901
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.24
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	159	0.92
Transmembrane Helix	160	181	0.91
Non-Cytoplasmic	182	188	0.86
Transmembrane Helix	189	211	0.93
Cytoplasmic	212	218	0.95
Transmembrane Helix	219	241	0.88
Non-Cytoplasmic	242	258	0.75
Transmembrane Helix	259	281	0.85
Cytoplasmic	282	297	0.89
Transmembrane Helix	298	318	0.71
Non-Cytoplasmic	319	484	0.71
Transmembrane Helix	485	499	0.24
Cytoplasmic	500	661	0.53
Transmembrane Helix	662	683	0.90
Non-Cytoplasmic	684	690	0.45
Transmembrane Helix	691	712	0.94
Cytoplasmic	713	732	0.56
Transmembrane Helix	733	753	0.70
Non-Cytoplasmic	754	755	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTFNDTTDI HKMQPPSCIP NPMSPGLRRK QLLWQNAVKH IISQRGLREQ FGVEPARKIH  60
   61 VTDAYIEEIN KQIRSKASRG MTKRRSSVAR VHPSFFGERS SSSSTQTGTS VDYISDADFF 120
  121 VHWGNIIHGV HVPTLRHIFK SKDLEKLYQR HSSHTRRTSL VVTNIIDAAA KLHLFLLYLA 180
  181 LAPDRSDILM SWFTGFFMAC AIALCVLVLT CKRSHSPKWL HYAGMASWLS QTAQVLGGLA 240
  241 YGLERDQSWY VLFTLFATYT LLPLPLLWAI GAGTLTSILH LTAETIRHIS EVGLFRKLLA 300
  301 KALLYTSMNV AGLFIHYLTD RSQRQAFLET RRCIEGRMKL ETENQRQERL VLSILPRFVA 360
  361 LEMISDMTSM DDELDPQQFH KVYIHQYKDV SILFADIKGF TLLSMNMSAQ ELVRLLNELF 420
  421 GRFDRLAEEY DCLRIKILGD CYYCVSGVPE PQRAHARCCV EMGLAMISTM RSLRKQQNFD 480
  481 MDMRIGIHTG SVLCGVLGLQ KWQFDVWSWD VGIANMLEAG GIPGRIHISR ATLDCLDGSF 540
  541 QTEDGRGYER NEFLRKHNID TFLICHKEDD LNEMEAEHPK TRHNNRPWNK EILASFSNGS 600
  601 YTQLPTSSAC RSMSKEINKR IEHAIDLRSS ERMRQEHITP VTLVFKDAHI EEKFSQVRDE 660
  661 MFKTNLVCSF IMLLLLMAVQ ALIPVPRMYL WTVLQFCLFL LGYLLLLVMV LAEEFKHSPG 720
  721 VLQQFCCWIH ENNSMRNLLT ITAIAMNFGM ALFDM