YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55962651
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SCCEKTHSHA EDELFKKLFD GYNKWSRPVP NTSDVVIVKF GLSIAQLIDV DEKNQMMTTN  60
   61 VWLKQEWNDY KLRWKPSDYD NVTSIRVPSE LIWVPDIVLY NNADGEFAVT HMTKAHLFHT 120
  121 GKVRWVPPAI YKSSCSIDVT FFPFDQQNCK MKFGSWTYDK AKIDLERIEN TVDLKDYWES 180
  181 GEWAIINAVG TYNTKKYDCC HEIYPDITYF FIIRRLPLFY TINLIIPCLL ISCLTVLVFY 240
  241 LPSDCGEKIT LCISVLLSLT VFLLLITEII PSTSLVIPLI GEYLLFTMIF VTLSIVITVF 300
  301 VLNVHHRSPS THKMPCWVHS VFLDLIPRWL FMRRPAPDSR RRQKLLLLQR QVPGMTARPA 360
  361 NASLSTSTSW FRGQNSGEDE SCRHFSYKDL ELGTLSSAIS LSLQASSPCP LGLTPPPLQK 420
  421 FGPAPRLEVG TASRQLSGRA NVTKRLDNMI PHDNPGFPLS PSVLQALEGV HYIADHLRAE 480
  481 DADFSVKEDW KYVAMVIDRI FLWMFIIVCL LGTIGLFLPP WLAGMI

Type	Start	End	Confidence
Non-Cytoplasmic	1	217	0.52
Transmembrane Helix	218	241	0.92
Cytoplasmic	242	248	0.49
Transmembrane Helix	249	271	0.89
Non-Cytoplasmic	272	282	0.42
Transmembrane Helix	283	304	0.92
Cytoplasmic	305	499	0.92
Transmembrane Helix	500	522	0.93
Non-Cytoplasmic	523	526	0.84