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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|56207736
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WQLLSPVLTL VCAFFWVGVY LLRCGVLIRT AVFLLTVCHL GEAAAQSLLD AQQLYSFTAT  60
   61 ALVLLACLAS GALMVVRLGQ GISVLLFISI IRTVSLLSLQ KVRASWRPYL AYLLGLLGVL 120
  121 LARYADRLLP EQGASHREGS RGDIPVFKRR RRSSSVVSSD MAQHGQSRSK SHRRTSLPCL 180
  181 QREQMLPQQE WDNKRGARGS QSSGTSVTVD IAVMGEAHGL ISDLLADQSL APNICSTLRA 240
  241 VSNLLNTQLT FQPLHHRPRL GPLLAFSDGH TCSDSEEAPE KGERLAIPKR LRRSLHPGLL 300
  301 RRISSTWTTT TSATGLPTLE PGPVRRDRSA SIKAPHDGPS SSLVNSDSWN NSNMLSISKS 360
  361 RSMSASYAAS SNTTNHIYSK SRRGCSSSTI SPLASPCHSP PVQSSPLTSP TNKTPSVELP 420
  421 DPELPPPRSP HKALTHSQSA PSSSAALWPP PTPLCSSCGR PYSKQRHSDG STEPAERTQQ 480
  481 SDEPAMMSSD YDSTYETNHS DSSDFAQTDE DREARRTLTL ATLIPAEEKP ILAPEPLLME 540
  541 GLEPLLCQIN NWNFPIFSLV EKTNGRCGCI LSQMSYRLFV DTGLFETFKI PVREFMNYFH 600
  601 ALENGYRDIP YHNRIHATDV LHAVWYLTTQ PVPGLPTLRT LGSSDSDSGL AHGRMKYLMS 660
  661 RTNAVEEEGY GCLSGLIPAL ELMALYVAAA MHDYDHPGRT NAFLVATSAP QAVLYNDRSV 720
  721 LENHHAASAW NLFMSRPEYN FLASLDHMEF KRFRFLVIEA ILATDLKKHF DFLAEFNAKV 780
  781 GDDGCSGIDW TNENDRLLVC QMCIKLADIN GPLKCKDLHL QWTEGIVNEF YEQGDEESSL 840
  841 GLPISPFMDR SAPQLAKLQE SFITHIVGPL CSSYDSAALM PGRWVHPLPK DGDEVEDESE 900
  901 EEDEDTAEEE EEDASTSSEL SQKPAPKKRR KVFCQISHHL LENHEMWKKV IAEESQSQTE 960
  961 GEESTCLSTT PEPILAIDEE EEEPGSKEEP TDDQGEGSTE EEEGPVPEDT HETQEPDGET1020
 1021 VEEADEKNTE TVEDIEGKQD EDQKDPE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle