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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|55963347
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDEVVLQCVA AIQKENRKFC LSAEGLGNRL CYLEPTSEAK YVPPDLCICN FVLEQSLSVR  60
   61 ALQEMLAGQS GEGAAQGGGH RTLLYGHAIL LRHSFSGMYL TCLKTSRSLT DKLSFDVGLQ 120
  121 EDSTGEACWW TIHPASKQRS EGEKVRIGDD LILVSVSSER YLHLSISNGS IQVDASFMQT 180
  181 LWNVQPTCSR SSVAVGYLLG GQVMRLFHGH DESLTIPGYE QSQEQQRVVN YEAGKGGSKA 240
  241 RSLWRLEPLR WSGSHMRWGQ PFRLRHLSTG HYLGQTEDQG LILLDREKSD TAATAFCFRP 300
  301 SKEKIESGPK RDIDGMGIAE IKYGDSVCFI MHVSTGLWLS YQAPDAKSSR LGPLKRRAFL 360
  361 SPEGHMDDGL ILQLCQHEES RAARIIRNTT HLFTQFIRGL DSLSGEKASE VTLPVSEVLE 420
  421 TLNDLIVYFQ QPDSELEHEE KQRQLRSLIK RQDLFKEEGM LTLLSHCIDR LNVYNSAAEF 480
  481 EELAGEEAGE AWKDILNLLY ELLAALIKGN RTNCTQFSRK LDWLVSKLER LESSSGILEV 540
  541 LHCILNESPE SLNIIQKAHI KSIISLLYKH GRNYKILDVL CSLCVCNGVA VRANQNFICD 600
  601 HLLPRRDLLL QTRLVNDVQS MRPNIFLGMS EGSAQYRKWY FELIIDQVDH FVTSEPTHLR 660
  661 VGWATTKGYA PYPGGGEGWG GNGVGDDLYS YGFDGLHLWA DCLSSSINTN LRFSPHLTGR 720
  721 IPRAVASINQ HLLNSDDVVS CCLDLGAPSM SFRINGQPVQ GMFEDFNVDG FFFPVVSFSA 780
  781 GVKVRFLLGG RHGDFKFLPP AGYAPCYEAL LPKEKMRVEP VKEYKRDLEG VRDLLGTTEF 840
  841 LSQASFIPVP VDTSQIVLPP HLENVRDKLA ENIHELWGMN KIELGWMYGK VRDDNKRQHP 900
  901 CLVDFSKLPE TEKNYNLQMS TETLKTLLAL GCHVAQVNIN AEDDLKKMKL PKNYMMANGY 960
  961 KPTPLDLSEI KLNPGQEVLV DKLAENAHNV WAKDRIKQGW TYGIQQDLKN RRNPRLVPYA1020
 1021 LLDERTKKSN RDSLREAIRT LVGYGYFIDP PDQETAHQVE KEGIESIRLF RVEKTYAVKT1080
 1081 GKWYFEFEAI TGGDMRVGWA RPGCRPDIEL GMDDQSFVFD GHRGRRVHMG SHFFARSWNK1140
 1141 GDVVGCLINM EDKSMIFTLN GEILITNKGS ELCFADFETE DGFIPVCSLG LSQIGRMNLG1200
 1201 KDASTFKYYT MCGLQEGFEP FAVNMNREVT MWFSKRLPTF VNVPEDHPHI EVTHKTFGTQ1260
 1261 TSNDDMICCR LSMPVEFHAG PRKITDINEV IAEDQRAKKD DGGKVDYGSI TKYFYSVKVF1320
 1321 AGQDPSSVWL GWVTPDYHYY SKHFSLDTVR TVTVTLGDER GRVHESVRRS NCYMVCAGDV1380
 1381 ASSSTSRSNV DLEIGCSIDL ASGLVSFTAN GRELPTAYQV EPNTKLFPAV FVQPTSPNLF1440
 1441 QIEFPKIPDA MPLSSAIFKS LLKNPEPQCP PRLDVQTIVS VLWSRMPNTF LTVETARVSE1500
 1501 RHGWVVQCLE PLQMMAVHIP EENRCIDIME LSENEDLRKF HYHTLKLFCS LCALGNTRVA1560
 1561 HSLCSHLGQS QFLYIIDNQY LTGQLREGFY NVLISIHLET AKEARLMMNN EFIIPVTDET1620
 1621 RSIRLFPDDS KRHSLPGVGL STSLTPRLNF TPPCFITTKR ETPLYSPQIP LAIMKEKAIS1680
 1681 MLTEAVQGGG AHIRDPVGGS VEYQFVPILK LIGTLLIMGA MTSEEVKTIL LLIEPIVFGD1740
 1741 SKEEEEQTAV VEQGAEKEEA TSNEEKAVEA GEEEGKESKQ PPKGLLETSL PESVKRQMCE1800
 1801 LLHYFCDCEL KQRIEAIVAF SDDFVSKLQF NQKFRYNELM LALNMSAAVT AKKTREFRSP1860
 1861 PQEQINMLLN FSAGDDCTCP EELQEELQTF HNDLRLHCAN LKELISQTMV SWAQEYKIQD1920
 1921 PELVRSMFSL LRRQYDGIGE LLRALRKSYT ISDKSVGDAI NLLASLGQIR SLLSVRMGEE1980
 1981 EGQLMIDGLG DIMNNKVFYQ HPNLMRVLGM HETVMEVMVN VLGGDKNKEI AFPKVVASCC2040
 2041 RFLCYFCRIS RQNQKSMFDH LSYLLENSSV GLGKHTHTGT HTSSACPEMR GSTPLDVAAS2100
 2101 SVMDNNSLAL ALEEPDLEKV VTYLAACGLQ NCPMLIARGY PDIGWNPIEG ERYLSFLRFA2160
 2161 VFVNGESVEE NANVVVKLLI RRPECFGPAL RGEGGQGLLA AMKEAIKISE DPALDLPSLP2220
 2221 EGVAPTVVED EEEVAHMGNS IMSFYSALID LLGRCAPEMH LINKGKGEAL RIRAILRSLV2280
 2281 PIKDLVGIIS IPLKMPVVNK DGTVTEPDMN ASFCPEHKAP MVLFLDRVYG VDDQSFLLHL2340
 2341 LEVGFLPDLR ASASLDSEVL RSTETALAMN RYIGSAVLPL LTRCAHLFAH TEHYATLVDS2400
 2401 TLHTIYRLSK GRSLTKAQRD AIDECLLAIC MHLRPSMLQQ LLRRLVFDVP QLTEYCKMPI2460
 2461 KLLTNHYEQN WKYYCLPTGL GSYGMASEEE LHLTKKLFWG LFDALSQKKY DSELFKMAMP2520
 2521 CLSAIAGAIP PDYVDSSPGS ALVKQASVDA QGNFDPQPIN TANISLPEKL DYIASKFAEH2580
 2581 SHEKWSSEKI ALGWTVGDKV DDKAKTHPLL KPYKALSEKE RETYRYPVKE TLKSMLAMGW2640
 2641 NIERTKEGEA MFQQRETEKQ RKISESTQAM VETVAENYHN IWAKKKKKEL DSKGDPARVC2700
 2701 LTLQVLCEQS QVNGYAISRG LKDMEQDSSS MEKRFAYKFL KRLLSYVDSA QEFIAHLEAM2760
 2761 ATSGKTDKSP HDQEIKFFAK ILLPLIDQYF KNHCLYFLSS PNINLSSSGY ASNKEKEMIT2820
 2821 SLFCKLAALV RHRISLFGSD SATMDCDEVR LRAGEGWRQD VLRERSRGPG EDSGEPEAGE2880
 2881 VGSVTHPDEG RNPDHQLHLS GPAAHADRAL PACHATPVWS RAAISQFAKH ICISVSVDDI2940
 2941 QLSCYRILTS LYSLGTGKNI YVEKQLPVLG ECLSSLVGAM PVAFLEANLN MHNPQSVFNT3000
 3001 KTPRERAILS MPDTVDEMCP EMPHLDGLMK EIGDISESGA RYTEMPQIIE VVLPMLCNYL3060
 3061 SYWWAKGPEN SPDGANCCTS VTSEHLSLIL GNILKILNNN LGIENAPWMK RLAVYTQPII3120
 3121 SRASADLLRA HFLPTLEKLK KKTVKVVSEE EMLRAESRAD TQEAELQILD EFAVLCRDLY3180
 3181 AFYPMLIRYV DNNRSTWLKE PDSDSTELFK MVSEIFILWC KSHNFKREEQ NFVVQNEINN3240
 3241 LAFLAGDSKS KMSKAIFVTQ SGGQDQERRG KKRRGELYSV QTSLIVAAHK KMLPIGLNMC3300
 3301 TPGDQELISL AKIRYSLKDT DDEVKDYLRK NLHLQEKSED PAVQWQINLY KDIVLKSEGP3360
 3361 PDPEQNVERI QAISSAVYHL DQVELPLRNK KILFQKLLSK QRKRAVVACF RMAPLYNLPR3420
 3421 HRSINLFLSG YQRLWIETEE YSFEEKLVQD LAVSTGLASA LPRVLCVPAG ALSAAECSVA3480
 3481 STAPAQAREH VSARLMYSSW PVFSSAGCVT HYRPRHSSQG MHDFRLSLSP RRLARKAVRF3540
 3541 SAAVKTPMTV VEEEEEEEAE VQPDPLHQLI LHFSHNALTE RSFLEEDPLY IAYADMMAKS3600
 3601 CAENEEEEEE EEGKEKTFEE KEMEKQKILY QQARLHARGA AEMVLQMISA SKGRLGPMVT3660
 3661 GTLKLGISVL NGGNVLVQQK MLDYLKEKRD AGFFKSLSAL MMSCSILDLN AFERQNKAES3720
 3721 LGMVTEEGSS SKVLQNDDFT KDLFRFLQLL CEGHNNDFQN FLRTQTGNTT TVNIIISTVD3780
 3781 YLLRLQESIS DFYWYYSGKD VMDEAGQHNF SKALSVAKQI FNSLTEYIQG PCIGNQQSLA3840
 3841 HSRLWDAVVG FLHVFANMQM KLSQDSSQIT LLKELMDLQK DMVVMMLSLL EGNVVNGTIG3900
 3901 KQMVDTLVES SSNVEMILKF FDMFLKLKDL TSSDNFKEYD PDCKGMISKR DFQKSMESQK3960
 3961 QYTQSEIEFL LSCVEADEND MFNYSDFVER FHEPAKDIGF NVAVLLTNLS EHMPHDSRLS4020
 4021 TFLDLAESVL SYFEPYLGRI EIMGGAKRIE RVYFEISESS RTQWEKPQVK ESKRQFIFDV4080
 4081 VNEGGESEKM EMFVNFCEDT IFEMQLASQI SEPDPTERPE EEEEEELHSL LEGLSEEEDA4140
 4141 SLESASAFTA ACASVKKSMS NFRQMLTFKS MKKQMKKFRK LTIREMITGF FSFFWMLFTG4200
 4201 FFKGIFGIIF GFFHIIWSSM FGGGLVEGAK NMKVTDILGN MPDPTQFGIH GDVLEAEKAE4260
 4261 ISEMVVSADM VQMTGAGGGE KLETDVIMDL LNPAVKKEGK HGAEPGLGDV CEILTETSAP4320
 4321 VEKKKSQKVA AEKPESEPEK ADTENQEKED KTKEEAPEEP AAEKPAPKVK RGSSKDESPA4380
 4381 FMASFFAGLE VYKTKMLNYL ARNFYNLRFL ALFVAFAINF ILLFYKVTGD FDDEEEEEGS4440
 4441 WGGEEEEADE DEGGMEYFIL QESTGYMAPT LTFLAVLHTV ISLLCVFGYY CLKVPLVVFK4500
 4501 REKEIARKLE FDGLYITEQP SDDDIKGQWD RLVIATPSFP NNYWDKFVKR KVINKYGDLY4560
 4561 GAERIAELLG LDKSALDFDP TEEAVVKEAS LLSWLSSIDT KYHVWKMGVV MTDNSFLYLI4620
 4621 WYTTMSILGH YNNFFFAAHL LDIAMGFKTL RTILSSVTHN GKQLVLTVGL LAVVVYLYTV4680
 4681 VAFNFFRKFY NKSEDEDAPD MKCDDMMTCY LFHMYVGVRA GGGIGDEIED PAGDPYELYR4740
 4741 ILFDITFFFF VIVILLAIIQ GLIIDAFGEL RDQQEQVKED METKCFICGI GNDYFDRTPH4800
 4801 GFETHTLQEH NLANYLFFLM YLINKDETEH TGQESYVWKM YQERCWDFFP AGDCFRKQYE4860
 4861 DQLG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle