YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|56207282
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEFLEDPSV LTKDKLKSAL LANNVALPNG DQRKDVYVQL YLKNLTVQNK KSSGSPDVFS  60
   61 SDEELPPAPV VSNRSRSGRK ATRKTDKVRP DDVDVTELSN EGLKDLLLKY GLNAGPIVAS 120
  121 TRKVYEKRLQ KLLDQGPPVA VALPSETSQT DGNQNGNNDS DQYSDREEEP VAPAPVTVPE 180
  181 PEVEAELIPV VERPVRSRGK TPVTSRTRSG QHTREDVEEE DWPVLNVKRK LKRSSHRPDQ 240
  241 MVPASDDTEN SELSSAECFA VSEDRRRTGP GAGRRETRPL LSDRTSKLSS KSESLRRRSA 300
  301 PVRSVLNEAS SSDKDFSEPS IVKEVSVSLM RMKVQPLTVP KDPKPSKRYS MSATESTKRP 360
  361 VSSLNNKHDE NTADIPSPPH RQSSREPLVS LINTACVEVD DQGMQDVLSC RSANGGLLAQ 420
  421 GVRSAAVSKL SKPVLSQSKP SKPLVDMMCC LSPSSDRQKE VFPSHSLPYK NFCLVSEDSL 480
  481 TVSCELSQES CGSPQTHPKS RHSKITPFLS QITPVRGLDN KLMDMKETMM VEKVSAIDQT 540
  541 PRAVERDVLK EIFPTENLNT PTGISATCRR PIRGAAGRPL IDTWLNESRQ RLSDLKQTTS 600
  601 SSSFSSTSSY TESRSVPRVS SIPLSASKST APPTVKSRSR RSLPVWVQLV LLSAVAGFLF 660
  661 FIYQAMETND VGLFKQSGTD DSTSK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle