YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56207719
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.87
Transmembrane Helix	28	47	0.92
Non-Cytoplasmic	48	252	0.97
Transmembrane Helix	253	273	0.91
Cytoplasmic	274	281	0.84
Transmembrane Helix	282	305	0.91
Non-Cytoplasmic	306	313	0.68
Transmembrane Helix	314	336	0.85
Cytoplasmic	337	355	0.92
Transmembrane Helix	356	376	0.92
Non-Cytoplasmic	377	387	0.81
Transmembrane Helix	388	410	0.90
Cytoplasmic	411	674	0.67
Transmembrane Helix	675	694	0.84
Non-Cytoplasmic	695	700	0.46
Transmembrane Helix	701	721	0.94
Cytoplasmic	722	729	0.49
Transmembrane Helix	730	750	0.87
Non-Cytoplasmic	751	771	0.64
Transmembrane Helix	772	795	0.84
Cytoplasmic	796	801	0.57
Transmembrane Helix	802	825	0.89
Non-Cytoplasmic	826	827	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCKTDCIER PLSLVFEKLG RLIGRHPVVF ILLSLYVAAG LGAGFIFLKE REANDIEDQF  60
   61 TPVNGPAKRD REIVAEHFPP SDEFSQLRLM SEGTYASLII TDLQGENILT AAAFEEILAL 120
  121 DRQVKTLQHL GNTFEKLCAK IKGNCVSNAV LDIIRYNAAD IDSVTITYPI NDKTFLGTTI 180
  181 GGVETQPNSS MLKSAKAIRL YYFLDEKKSK GNADWLEGFI QFFSNYTDQE KVSVSYFTSV 240
  241 SRQNEFEGNT DSVIPLFSIT YALAINIAVL SCLRLDCVRT KVWVALLGVV SAGMAVLASF 300
  301 GLLLFCGMPF AMTVGSAPFL ILGVGVDDMF IMISSWQKTA VDKGVEFRLA EAYKEAGVSI 360
  361 TITTLTDVLA FYIGLLTPFR SVQSFCMYTS TALLFCYLFN ITFFGACLAL NGRREKSNRH 420
  421 FLTCMTVPKP SGDAVSCCAG GAFDENTNKE HEMPMEVFFK KYYGPFLAKV WVKVLVCLIY 480
  481 AGYLAVSIYG CFQMEEGLDL KHLATDGSYV ADYYDREDEF FSAFGPNVML VIKDEHFQYW 540
  541 SPDARKSLDL CLKNFRDLTM VDSEIPLTSW LDAYMKFGQS SFDLNNEMIF KTQLPAFLNR 600
  601 SEFSHDVHFT DNNINATRMF IQTVNIKTAI DEKDMLNAFR EAAHTCGRLE TPVDLIVYHP 660
  661 AFIYFDQYAV IVSNTIQNLV AATCVMLVIS LLLIPHPLCS LWVTFSIASV IVGLAGFMAL 720
  721 WDISLDSVSM INLVICIGFS VDFSAHISYA FVSSEKSSAN EKATDALHKL GYPIIQGAVS 780
  781 TIAGVVVLAA AKSYIFRTFF KIMFLVILFG ALHGIVFLPV FLSFLGI