YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55962413
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENETSISSG YIPHYLLRGD PFASKLSKEA DIVAAFYILV IGILSATGNG YVMYMTFKRK  60
   61 TKLKPPEIMT LNLAIFDFGI SVSGKPFFIV SSFSHRWLFG WQGCRYYGWA GFFFGCGSLI 120
  121 TMTVVSFDRY LKICHLRYGT WLKRHHAFLS VVFIWAYAAF WATMPVVGWG NYAPEPFGTS 180
  181 CTLDWWLTQA SVSGQSFVMC MLFFCLIFPT VIIVFSYVMI IFKVKSSAKE VSHFDTRNKN 240
  241 NHSLEMKLTK VAMLICAGFL IAWIPYAVVS VMSAFGEPDS VPIPVSVVPT LLAKSSAMYN 300
  301 PIIYQVIDCK KKCVKSCCFQ AWRKKKPSKT S

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.95
Transmembrane Helix	33	54	0.92
Cytoplasmic	55	67	0.90
Transmembrane Helix	68	89	0.87
Non-Cytoplasmic	90	105	0.86
Transmembrane Helix	106	127	0.91
Cytoplasmic	128	146	0.87
Transmembrane Helix	147	168	0.89
Non-Cytoplasmic	169	194	0.94
Transmembrane Helix	195	219	0.90
Cytoplasmic	220	250	0.90
Transmembrane Helix	251	269	0.92
Non-Cytoplasmic	270	331	0.77