YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55962272
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTMGNTSNQI TANNTTDPFG RNEDVAKMEI TVLSVTFLVA VVGNLCVLLA MHNTKKKSSR  60
   61 MHLFIKHLSL ADLVVAFFQV LPQLCWEITY RFYGPDFLCR IVKHLQVLGM FASTYMMVMM 120
  121 TLDRYIAICH PLKTLQQPTR RAYIMICSTW LCSLLLSTPQ YFIFSLSEIQ NGSDVYDCWG 180
  181 HFIEPWGIRA YITWITVGIF LIPVVILMIC YGFICHSIWK NFKCKTKRGA AHNPKSGMIG 240
  241 KASVSSVTII SRAKLRTVKM TFVIVLAYIV CWAPFFTVQM WSVWDENFSW DDSENAAVTL 300
  301 SALLASLNSC CNPWIYMLFS GHLLHDFLGC FPCWNKPQNT LHKEDSDSSI RRNTLLSKLT 360
  361 SVRAKDGFDS WKDPCNSRKS SQSIGLDYSR KSSQCLHFDC SRKSSQSVPM ES

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.93
Transmembrane Helix	30	51	0.89
Cytoplasmic	52	62	0.89
Transmembrane Helix	63	86	0.82
Non-Cytoplasmic	87	103	0.87
Transmembrane Helix	104	122	0.91
Cytoplasmic	123	141	0.83
Transmembrane Helix	142	163	0.93
Non-Cytoplasmic	164	190	0.95
Transmembrane Helix	191	215	0.90
Cytoplasmic	216	259	0.94
Transmembrane Helix	260	278	0.94
Non-Cytoplasmic	279	295	0.87
Transmembrane Helix	296	318	0.83
Cytoplasmic	319	412	0.94