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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|55962263
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQSCQSSTSC NVVLTDSQGS FTSPCYPNDY PPSQSCNWTI QAPAGFIVQI TFLDFELEEA  60
   61 QGCIYDRVVV KTGTSDAKFC GLTANGLTLN STGNVMEVFF NSDFSVQKKG FHISYKQVAV 120
  121 TLRNQKVTMP KSSKTILRVS NSISIPVLTA FTVCFEIART AQKATETIFT LSDAAGTSIL 180
  181 AFEKTSNGME LFIGASYCSV DNLLTSSDIT ATMKPLCLTW TKSSGLIGVY FGGHYFSSIC 240
  241 SASQIYTLQS GGLLQIAGKG SSSVSVDDQN LDGFIYNFRL WDHAMLSSEL SALTCDTVGN 300
  301 VVDWDHSYWT IPGSSTQTDS TLSCSEYTEI ESVPTVNTTS FAPVRQAVSK QEHLESHSDL 360
  361 SLPWAMSELA QVSERLETDS SWTLIPSSSM SPGVTGVQMI QSELKSLPGQ TAAPPEWSPT 420
  421 HLVDIKLTST VAWGLSKETA TKDTVKDVQH DQKKSTMVTH GKMESLTKED IFYRSTLVVT 480
  481 DEQTPDRDAT AIISQWLNQT FQNWMYRVYV DGIRQIYLAL LVYKNTTDVN LAEVEIESML 540
  541 RSAPAIGNGL TLDSVTVNLM ENAMDVAVQL ADISNNGLSK EELTQVVTKV MELVNIAKIN 600
  601 ATLASTVVTI ISNVMVSSED AQKDASETAL KAVDELVQKI EFDGPSLTIS SKNLVVGVSA 660
  661 LDTTNFNGST LSAFIATNTT DPQIDFDSEA HNALAVVTLP PTLLQNLSLS QIEKVSRINF 720
  721 MFFGRTGLFQ DHQNNGLTLN SYVVASSVGN FTIKNLQDPV RIEIAHLEYQ KDPNPQCVFW 780
  781 DFNLQNYSGG WNSDGCKVGS DSNSNRTVCL CNHLTHFGIL MDVSRAAELI DEKNNRVLTF 840
  841 ITYIGCGISA IFSAATLLTY IAFEKLRRDY PSKILMNLST SLLFLNMVFL LDGWLASYEI 900
  901 KELCVTVAVF LHFFLLTSFT WMGLESIHMY IALVKVFNTY IRRYILKFCI VGWGVPATIV 960
  961 AIVLAVSKDS YGKNYYGKGK DGQGTSEFCW ILNPVVFYVT CVAYFSIIFL MNVAMFIVVM1020
 1021 IQICGRNGKR SNRTLREDIL RNLRSVVSLT FLLGMTWGFA FFAWGPVSLA FMYLFTIFNS1080
 1081 LQGLFIFVFH CALKENVQKQ WRRYLCCGKL RLADNSDWSK TATNNTKKVS SDNLGKSLSS1140
 1141 SSFGSTTANW TSKAKATLNP FARHSNAGKS SSNQSSPKCS PSDGEPSSSI LPVHQVLDKV1200
 1201 KGYCSVRSDN FYKNIIMSDS FSNSTKF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle