YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58332654, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.56
Transmembrane Helix	7	29	0.56
Cytoplasmic	30	39	0.57
Transmembrane Helix	40	61	0.93
Non-Cytoplasmic	62	96	0.70
Transmembrane Helix	97	117	0.93
Cytoplasmic	118	132	0.87
Transmembrane Helix	133	151	0.98
Non-Cytoplasmic	152	158	0.82
Transmembrane Helix	159	182	0.90
Cytoplasmic	183	200	0.94
Transmembrane Helix	201	226	0.89
Non-Cytoplasmic	227	238	0.86
Transmembrane Helix	239	257	0.95
Cytoplasmic	258	267	0.80
Transmembrane Helix	268	287	0.68
Non-Cytoplasmic	288	318	0.74
Transmembrane Helix	319	340	0.86
Cytoplasmic	341	391	0.75
Transmembrane Helix	392	413	0.87
Non-Cytoplasmic	414	433	0.67
Transmembrane Helix	434	454	0.90
Cytoplasmic	455	460	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGVLGLCTA ASWIPCLCGS APCLLCRCCP SGNNSTVTRL IYAFFLLIGV TVACVMLIPG  60
   61 MEEQLKKIPG FCDGGMGSSI PGISGHVNCD VLVGYKAVYR VCFGMAMFFL LFSLLMIKVK 120
  121 SSQDPRASVH NGFWFFKFAA AVGITVGAFF IPEGPFTTVW FYVGMGGAFC FILIQLVLLI 180
  181 DFAHSWNESW VEKMEEGNSR CWYAALLSAT GMNYVLSLVA IVLFYVYYTH PEGCAENKAF 240
  241 ISVNMLLCIG ASLMSVLPKI QESQPRSGLL QSSVITVYTM YLTWSAMTNE PDRKCNPSLL 300
  301 SIIGYNSTST PGQVKVVQWW DAQGIVGLVL FLLCVLYSSI RTSNNSQVNK LTLTSDESTL 360
  361 IEDGGRSDGS MEDSDNAHRA VDNERDGVTY SYSFFHFMLF LASLYIMMTL TNWYSPDSSY 420
  421 EMMTSKWPSV WVKISSSWVC IVLYVWTLVA PLVLTNRDFD