YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55956988
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPDSSFAAQ KRGGGALPTT ATPNGGRTSS VLPRGRQIQR TFNNIKITIL CGFVTILVLR  60
   61 GTIGFGSLAS SGSDAENANL IEETNRILDE IRSDTDLDDP SDTFSHLNST YSLGPKITTW 120
  121 DADRKFWLQK NPDFPNFIHG KPRVLLVTGS PPNPCDNPTG DHYLLKVMKN KIDYCRIHGI 180
  181 EIVYNLAHLE KEMAGYWAKL PLIRKLMLSH PEVEWIWWMD SDALFTDMVF EIPFSKYNDH 240
  241 NLVIHGYPDL LFEQKSWIAL NTGSFLIRNC QWSLDLLDAW APMGPKGPVR EEAGKVLTAN 300
  301 LKSRPAFEAD DQSALIYLLM SQKDQWMDQV FIENSYYLHG YWAGLVDRYE EMVEKYHPGL 360
  361 GDERWAFVTH FAGCKPCGSY GDYPVERCMK SMERAFNFAD NQVLKLYGFR HKGLLSPNIK 420
  421 RIRNETDNPL LYVDQLDLRH AKHESTGPQS

Type	Start	End	Confidence
Cytoplasmic	1	43	0.83
Transmembrane Helix	44	64	0.80
Non-Cytoplasmic	65	450	0.99