YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55956986
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQESTFTAQ KRAGALPTTV TANGGVRGRS PNVLPRGRQI NRTFNNVKIT ILCGFVTILV  60
   61 LRGTIGIGNV SSSEAEAENQ NLIEETNRIL SDIRSDKDPD DPVGDQPETF MSLNDTYSLG 120
  121 PKIANWDKDR KMWLQKNPEF PNFVNGKPRI LLVTGSPPNP CDNAIGDHYL LKAIKNKIDY 180
  181 CRIHGIEILY NLAHLEKEMA GYWAKLPLIR RLMLSHPEVE WIWWMDSDAL FTDMVFEMPL 240
  241 SKYNRHNLVI HGYPDLLFDQ KSWIALNTGS FLFRNCQWFL DLLDAWAPMG PKGPIREEAG 300
  301 KILTAYLKGR PAFEADDQSA LIYLLTSQKD KWMHKVSIEN SYYLHGYWAG LVDRYEEMIQ 360
  361 KYHPGLGDER WPFVTHFVGC KPCGSYGDYP AERCLKNMER AFNFADNQVL NLYGFKHKGL 420
  421 LSPNIKRIRN ETDNPLQYVD QLDVRHAKHE STETQSLSGH TSFCTESARL RLEF

Type	Start	End	Confidence
Cytoplasmic	1	45	0.66
Transmembrane Helix	46	66	0.63
Non-Cytoplasmic	67	474	0.99