YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55956968
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAGRAHGHR NRLRRLIPRL LLLVFAVYAA SFAIYLLLQS PQSESHHQSP PDPTPRTEAR  60
   61 DGVGAPPYSH KPWPRLPSCL PWVYSAAPPH TCEAYFGNGF SRRVDVLPAG RGGGGGWFRC 120
  121 HHSETLGSSI CEGARVRLDP ALIAMSRGGE PLEQVMGRAE EEELPKYEPS ALQVEGPAAG 180
  181 KTAPLVDAGF LNDYVPNGGI RMHTMRALLD SARVVPPGEL HCSQWVEEPT LLVTRFEYAN 240
  241 LFHTITDWYS AYVSSRVTNL PDRPNVVFVD GHCKAPLEQT WEALFSNVTY IKSFSGPVCF 300
  301 RRAVLSPLGY ETALFKGLSE SFSCEGASAQ SLRNRPDHQK TARLSEFGEM IIASFDLLED 360
  361 GIVPSKKTST GLKVLFVRRE DYLAHPRHSG KVESRLSNEQ EVFGAVEKWA KKGQKCKINV 420
  421 VNGLFAHMSM KEQLQAILEA SVIIGAHGAG LTHLVSATPD TKVLEIISSF YRRPHFALIS 480
  481 HWKALEYHAI NLPGSYASIP DVTSELSNIL KGLGC

Type	Start	End	Confidence
Cytoplasmic	1	19	0.85
Transmembrane Helix	20	38	0.92
Non-Cytoplasmic	39	515	0.99