YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60592737
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSPTKILC DAGESDLCRD DAAAFLLKFV AIASILLAGV AGVAIPLIGK NRRFLQTEGN  60
   61 LFVAAKAFAA GVILATGFVH MLAGGTEALT NPCLPDYPWS KFPFPGFFAM VAALITLIVD 120
  121 FMGTQYYESK QQRNEVAGGG EAADVVEPGR EETSSVVPVV VERGNDDSKV FGEEDGGGMH 180
  181 IVGIRAHAAH HRHSHSNGHG TCDGHAHGQS HGHVHVHGSH DVENGARHVV VSQILELGIV 240
  241 SHSIIIGLSL GVSQSPCTIR PLIAALSFHQ FFEGFALGGC ISQAQFKNKS AIIMACFFAL 300
  301 TTPIGIGIGT AVASSFNSHS PGALVTEGIL DSLSAGILVY MALVDLIAAD FLSKRMSCNL 360
  361 RLQVVSYVML FLGAGLMSAL AIWA

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.90
Transmembrane Helix	29	49	0.92
Cytoplasmic	50	61	0.89
Transmembrane Helix	62	83	0.92
Non-Cytoplasmic	84	103	0.89
Transmembrane Helix	104	124	0.93
Cytoplasmic	125	233	0.97
Transmembrane Helix	234	252	0.66
Non-Cytoplasmic	253	261	0.51
Transmembrane Helix	262	281	0.67
Cytoplasmic	282	290	0.84
Transmembrane Helix	291	313	0.92
Non-Cytoplasmic	314	328	0.81
Transmembrane Helix	329	349	0.86
Cytoplasmic	350	362	0.77
Transmembrane Helix	363	383	0.94
Non-Cytoplasmic	384	384	0.99