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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|63099710, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAAAGRSAH LGPGPAPAAR PLRSLVLLQL LLLVGAPGAA RAQGADFPEL CSYTWEAVDT  60
   61 KNNMLYKINI CGNMNIDQCG LSSAVCMYDV KTNSYYSVGD FSSKTATRSL LEFSTTHSCK 120
  121 QNPSHKIQSS ITFLCGKTLG TPEFVTATDC VHYFEWRTTA ACKKDTFKAK KEVPCYAFDG 180
  181 ELKKHDLNPL IKISGGYLVD DSDPDTSLFI NVCRDIDSLR DSSLQLRGCP PGTAACLVRG 240
  241 EQAFDVGQPK GGLKLLSTDR LVLSYVKEGA GELDFCDGHS PAVTITFVCP SERREGTIPK 300
  301 LTAKSNCRYE IEWVTEYACH RDYLESRTCS LSSAQHDVTI DLQPLRQDGA SLSPYYTSDG 360
  361 KEYMFYLNIC GEIQVPFCSK RDAAVCQVKK SDSSQVRVAG KYQNQTLRYS DGDLTLIYFG 420
  421 GDECSSGFQR MSVINFECNK TAGNDGKGAP VFTGEMDCTY FFTWDTKYAC VKEKEDLLCS 480
  481 VIDGKKRYDL SALARHSERE QNWEAVDGSE EEIGKKHYFI NICHRVLQEG QAKGCPEDAA 540
  541 VCSVDKNGFK NLGKFISPPT KERGNLQLSY SDGSDCGHKK ITSNITLVCK PGDLESAPVL 600
  601 RTSGDSGCFY EFEWHTAAAC VLSKTEGENC TVFDSQAGFS FDLSPLTKKN GAYKVDTEKY 660
  661 DFYINVCGAV SVSFCQKDSG ACQIAKSDGK PWNLGVSNAK LSYYDGMIQL NYKDGTPYNN 720
  721 EKHTPRATLI TFLCDREAGV GHPEYQEEDN STYNFRWYTS YACPEEPLEC VVTDPSTLEQ 780
  781 YDLSSLAKSE GGRGGNWYAM DNAGEHSTWR KYYINVCRPL NPVPGCDRYA SVCQMKYKND 840
  841 QGSFSEVASI SNLGVTKTGP TVEDSGSLLL EYVNGSECTT SDGKLTTYTT RIHLVCSRGS 900
  901 MNTHPIFSLS WECVVSFLWN TEAACPIQIM TDTDQACSIR DPNSGFVFDL NPLNSSQGYV 960
  961 VSGIGKTFVF NVCGTMPVCG TLDGKPASGC EAEFQTEDLK NLKPKRLVGL EKTLQLSTEG1020
 1021 FITLTYKGPL SPSTGNSYAF IIRFVCNDDV YPGTIKFLHQ DIDSGLGIWN TFFEFETALA1080
 1081 CVPSPVDCQV TDVAGNEYDL SGLSRVRKPW TAVDTSVDGR KRTFYLSVCN PLPYIPGCHG1140
 1141 SAVGSCLVTE DNGWNLGVVQ ISPQAAENGS LSLVYVNGDK CGNQRFSTRI TLECAQTSGS1200
 1201 PTFQLRDDCE YVFVWRTVEA CPVIRVEGDN CEVKDPRHGN LYDLKPLAVN DTIVSAGEYT1260
 1261 YYFRVCGKLS SDVCPTDDKS KVISSCQEKR GPLGFHKVAG LLTQKLTYEN GLLKMNYTGG1320
 1321 DTCHKVYQRS TTIFFYCDRS TQRPVFLRET SDCSYLFEWR TQYACAPFDL TECSFKDEAG1380
 1381 NTFDLSSLAR YSDNWEAVTS TGATEHYLIN VCKSLSPQAG SEPCPPEAAA CLLSGSKPVN1440
 1441 LGRVRDGPQW REGTIVLKYV DGDLCPDQIR KKSTTIRFTC SESQVNSRPM FISAVEDCEY1500
 1501 TFSWPTAAAC PVRSNVHDNC QVTNPATGHL FDLSSLSGRA GHTAAYSEKG LVYISICEDN1560
 1561 ENCSPGVGAC FGQTRISVGK ANKRLTYVDQ VLQLVYEDGS PCPSKSGLTY KSVISFVCRP1620
 1621 EAGPTNRPML ISLDKQTCTL FFSWHTPLAC EQVTECSVRN GSSIIDLSPL IHRTGGYEAY1680
 1681 DESEDDTSDT GPDFYINICQ PLNPMHGVPC PAGAAVCKVP VDGPPIDIGR VTGPPILNPI1740
 1741 ANEVYLNFES STPCLADKHF NYTSLIAFHC RRGVSMGAPM LLRTSDCDFV FGWETPLVCP1800
 1801 DEVKMDGCSL TDEQLHYSFN LSSLSKSTFK VTRDSRTYSI GVCTAAAGLD EGGCKDGGVC1860
 1861 LLSGSKGASF GRLASMRLDY RHQDEAVILS YANGDNCPPE TEAGDPCVFP FIFNGKSYEE1920
 1921 CVVEGRARLW CSTTANYDRD HEWGFCRHSN SHRMSSIIFK CDEDADIGRP QVFSEVRGCE1980
 1981 VTFEWKTKVV CPPKKMECKF IQKHKTYDLR LLSSLTGSWF FVHEGVSYYI NLCQKIYKGP2040
 2041 LDCSDRASIC KKSASGVVQA LGLVHTQKLD VLDDKVIVTY SKGYQCGENK TASAVIELTC2100
 2101 AKTVGRPSFM RFDIDSCTYY FSWDSRAACA VKPQEVQMVN GTITNPINGK SFSLGDIYFK2160
 2161 LFSASGDMRT NGDKYLYEIQ LSSITSSRNP ACSGANICQV KPNDQHFSRK VGTSDKTKYY2220
 2221 IQDGDLDVVF ASSSKCGKDK TKSVSSTIFF HCDPLVKDGI PEFSHETADC QYLFSWYTSA2280
 2281 VCPLGVDLDG DNAGEDTQEH KGLSERSQAV GAVLSLLLVA LTGCLLTLLL YKKERREIVV2340
 2341 SRLTSCCRRS ANVSYKYSKV NKEEEADENE TEWLMEEIQA PTPRPGKEGQ ENGHITTKSV2400
 2401 TAEALTSLHG DDQDSEDEVL TIPEVRVHSG RGTGAASVPH GRIPQRRGLR ESADGAGGLV2460
 2461 TGDRVRRGKP RPVPQKTGTS GGLASFHDDS DEDLLHI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle