YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62203383
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CAAARDMRKR LIQVLGFLIS TFGWLFVSCT LAMDYWRILY VGGKGGNWMV KASWYWSNLW  60
   61 KDCVTDMSSI SDCRDYDALW AVTPYVQAVR GLLMIAMGLG FIAAILCFIG MECTYIGGSE 120
  121 KNKRRVLLAG AALHFAGGLS AAAAYCLYTN RVARAAFAPA VDTTIIRYGI GAPVFFGLVG 180
  181 SFLIILGSAL YAVTHISTRK KTVSVGRTLY ARPSYGRRTA SKTAYTSAYS APSRQSSSRL 240
  241 SRMSQATDEK LPARDTFV

Type	Start	End	Confidence
Cytoplasmic	1	13	0.90
Transmembrane Helix	14	36	0.89
Non-Cytoplasmic	37	88	0.97
Transmembrane Helix	89	111	0.88
Cytoplasmic	112	125	0.81
Transmembrane Helix	126	148	0.92
Non-Cytoplasmic	149	169	0.91
Transmembrane Helix	170	193	0.89
Cytoplasmic	194	258	0.98