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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AOXC_RAT
Protein type: Transmembrane
Type Confidence: 0.87
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSKESDEL IFFVNGKKVI ERNADPEVNL LFYLRKIIQL TGTKYGCGGG DCGACTVMIS  60
   61 RYNPISKKIS HFSAAACLVP ICSLHGAAVT TVEGIGSTKT RIHPVQERIA KGHGTQCGFC 120
  121 TPGMVMSIYT LLRNHPEPST EQIMETLGGN LCRCTGYRPI VESARSFSPN SACCPMNEKW 180
  181 KCCLDEGKNE PERKNSVCTK LYEKEEFQPL DPTQELIFPP ELMRMAEDSP NTVLTFRGER 240
  241 TTWIAPGTLN DLLELKMEYP SAPLVIGNTC LGLDMKFKDV SYPIIISPAR ILELFVVTNT 300
  301 NEGLTLGAGL SLTQVKNILS DVVSRLPKER TQTYRALLKH LRTLAGQQIR NVASLGGHII 360
  361 SRLPTSDLNP IFGVGNCKLN VASTEGTQQI PLNDHFLAGV PEAILKPEQV LISVFVPLSR 420
  421 KWEFVSAFRQ APRQQNAFAI VNAGMRVAFK EDTNTITDLS ILYGGIGATV VSAKSCQQLI 480
  481 GRCWDEEMLD DAGRMIREEV SLLTAAPGGM VEYRKTLAIS FLFKFYLDVL KQLKRRNPHR 540
  541 CPDISQKLLQ VLEDFPLTMP HGTQSFKDVD SQQPLQDQSG RPIMHQSGIK HATGEAVFCD 600
  601 DMSVLAGELF LAVVTSSKPH ARIISLDASE ALASPGVVDV ITAQDVPGDN GREEESLYAQ 660
  661 DEVICVGQIV CAVAADSYAR AKQATKKVKI VYEDMEPMIV TVQDALQHES FIGPEKKLEQ 720
  721 GNVQLAFQSA DQILEGEVHL GGQEHFYMET QSVRVIPKGE DMEMDIYVSS QDAAFTQEMV 780
  781 ARTLGIPKNR ITCHVKRVGG GFGGKTSKPG LLASVAAVAA QKTGRPIRFI LERGDDMLIT 840
  841 GGRHPLLGKY RVGFMNNGKI KAADIQLYIN GGCTPDDSEL VIEYALLKLE NAYKIPNLRV 900
  901 RGRVCKTNLP SNTAFRGFGF PQGAFVTGTW VSAVAAKCHL PPEKVRELNM YKTIDRTIHK 960
  961 QEFDPTNLIK CWETCMENSS YYSRKKAVDE FNQQSFWKKR GIAIIPMKFS VGFPKTFYHQ1020
 1021 AAALVQIYTD GSVLVAHGGV ELGQGINTKM IQVASRELKI PMSYIHLDEM NTMTVPNTIT1080
 1081 TGGSTGADVN GRAVQNACQI LMKRLEPIIS QNPNGDWEEW INEAFIQSIS LSATGYFRGY1140
 1141 QADMDWEKGE GDIYPYFVFG AACSEVEIDC LTGAHKNIRT DIVMDGSFSI NPAVDIGQIE1200
 1201 GAFVQGLGLY TLEELKYSPE GVLYTRGPHQ YKIASVSDIP EEFHVSLLTP TQNPKAIYSS1260
 1261 KGLGEAGMFL GSSVFFAIAA AVAAARKERG LPLILAINSP ATAEVIRMAC EDQFTNLVPK1320
 1321 TDSKCCKPWS IPVA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle