YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67942063
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.95
Transmembrane Helix	37	57	0.91
Non-Cytoplasmic	58	67	0.79
Transmembrane Helix	68	89	0.92
Cytoplasmic	90	99	0.88
Transmembrane Helix	100	121	0.85
Non-Cytoplasmic	122	163	0.90
Transmembrane Helix	164	184	0.92
Cytoplasmic	185	192	0.81
Transmembrane Helix	193	211	0.95
Non-Cytoplasmic	212	251	0.92
Transmembrane Helix	252	275	0.85
Cytoplasmic	276	289	0.85
Transmembrane Helix	290	312	0.89
Non-Cytoplasmic	313	334	0.83
Transmembrane Helix	335	355	0.69
Cytoplasmic	356	361	0.45
Transmembrane Helix	362	378	0.70
Non-Cytoplasmic	379	389	0.79
Transmembrane Helix	390	411	0.94
Cytoplasmic	412	431	0.91
Transmembrane Helix	432	450	0.97
Non-Cytoplasmic	451	457	0.74
Transmembrane Helix	458	479	0.88
Cytoplasmic	480	537	0.95
Transmembrane Helix	538	560	0.91
Non-Cytoplasmic	561	568	0.81
Transmembrane Helix	569	590	0.94
Cytoplasmic	591	598	0.91
Transmembrane Helix	599	621	0.92
Non-Cytoplasmic	622	627	0.85
Transmembrane Helix	628	647	0.93
Cytoplasmic	648	703	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPCRAVLTF TRCLIRRKIV TLDSLEDSKL CRCLTTMDLI ALGVGSTLGA GVYVLAGEVA  60
   61 KADSGPSIVV SFLIAALASV MAGLCYAEFG ARVPKTGSAY LYTYVTVGEL WAFITGWNLI 120
  121 LSYVIGTSSV ARAWSGTFDE LLNKQIGQFF KTYFKMNYTG LAEYPDFFAV CLVLLLAGLL 180
  181 SFGVKESAWV NKFFTAINIL VLLFVMVAGF VKGNVANWKI SEEFLKNISA SAREPPSENG 240
  241 TSIYGAGGFM PYGFTGTLAG AATCFYAFVG FDCIATTGEE VRNPQKAIPI GIVTSLLVCF 300
  301 MAYFGVSAAL TLMMPYYLLD EKSPLPVAFE YVGWGPAKYV VAAGSLCALS TSSWIHFPNA 360
  361 SCNLCYGGGW VAFQMSSSNQ FQNEDTNNCY FVIGCSGSLL GSMFPLPRIL FAMARDGLLF 420
  421 RFLARVSKRQ SPVAATMTAG VISAVMAFLF DLKALVDMMS IGTLMAYSLV AACVLILRYQ 480
  481 PGLCYEQPKY TPEKDILESC TNATSKSESQ VTMLQGQGFS LRTLFNPSAL PTRQSASLVS 540
  541 FLVGFLAFLI AGLSILTTYG VRAIARLEAW SLALLALFLV LCAAVILTIW RQPQNQQKVA 600
  601 FMVPFLPFLP AFSILVNIYL MVQLSADTWV RFSIWMVLGF LIYFAYGIRD SLEGNPRDEE 660
  661 EDEDVCPDNV NAAAEEKSAM QANDHHQRNL SLPFILHEKT SEC