YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148685697, gi...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADAASLRAP LCTEQFGSGA PRGCSAAADG SLQWDGARRW GWLSRAPIAK PGQHAGGGGG  60
   61 PWAALTALSG LRSVLLPQGF PDSVSPDYLP YQLWDSVQAF ASSLSGSLAT QAVLQGLGVG 120
  121 NAKASVSAAT STWLVKDSTG MLGRIIFAWW KGSKLDCNAK QWRLFADILN DVAMFLEIMA 180
  181 PMYPIFFTMT VSTSNLAKCI VGVAGGATRA ALTMHQARRN NMADVSAKDS SQETVVNLAG 240
  241 LLVSLLMLPL VSDCPSLSLG CFVLLTALHI YANYRAVRAL VLETLNESRL QLVLEHFLQR 300
  301 GEVLEPASAN QMEPLWTGFW PSLSLSLGVP LHHLVSSVSE LKQLVEGHHE PYLLCWNKSR 360
  361 NQVRVALSQE AGPETVLRAA THGLILGALQ EDGPLPGELA QLRHQVQADP KKESWILVRE 420
  421 THQVLDTLFP KFLKGLQAAG WKTEKHHLEV DEWRATWPLS PEKKVL

Type	Start	End	Confidence
Cytoplasmic	1	54	0.80
Transmembrane Helix	55	76	0.44
Non-Cytoplasmic	77	98	0.58
Transmembrane Helix	99	114	0.37
Cytoplasmic	115	167	0.63
Transmembrane Helix	168	187	0.56
Non-Cytoplasmic	188	193	0.59
Transmembrane Helix	194	213	0.55
Cytoplasmic	214	233	0.51
Transmembrane Helix	234	252	0.46
Non-Cytoplasmic	253	253	0.42
Transmembrane Helix	254	272	0.62
Cytoplasmic	273	315	0.59
Transmembrane Helix	316	335	0.46
Non-Cytoplasmic	336	466	0.56