YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67678046, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.71
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGDAELARR GGWPWRWLPA LLLLQLLRWR CALGALPFTS SRHPGFADLL SEQQLLEVQD  60
   61 LTLSLLQGGG LGPLSLLPPD LPDLEPECRE LLMDFANSSA ELTACMVRSA RPVRLCQTCY 120
  121 PLFQQVAIKM DNISRNVGNA SESQRCAGSL LMADRMQIVV MVSEFFNSTW KEANCANCLT 180
  181 KNSEDLSNNT QDFLSLFNKT LACFEHNLQG RTYSLPPPKN YSEVCKNCKE AYRTLSLLYS 240
  241 EMQKMNGLES KAEPGTHLCI DVEDAMNITR KLWSRTFNCS VTCSDTVSVV AVSVFILFLP 300
  301 VVFYLSSFLH SEQKKRKLIL PKRLKSSTSF ANIQENST

Type	Start	End	Confidence
Signal Peptide	1	34	0.76
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	286	0.96
Transmembrane Helix	287	308	0.86
Cytoplasmic	309	338	0.87