YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88601501, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.98
Transmembrane Helix	30	51	0.94
Non-Cytoplasmic	52	59	0.77
Transmembrane Helix	60	83	0.82
Cytoplasmic	84	90	0.81
Transmembrane Helix	91	112	0.91
Non-Cytoplasmic	113	119	0.79
Transmembrane Helix	120	140	0.89
Cytoplasmic	141	146	0.70
Transmembrane Helix	147	167	0.93
Non-Cytoplasmic	168	175	0.82
Transmembrane Helix	176	198	0.92
Cytoplasmic	199	216	0.73
Transmembrane Helix	217	239	0.89
Non-Cytoplasmic	240	268	0.91
Transmembrane Helix	269	292	0.92
Cytoplasmic	293	306	0.77
Transmembrane Helix	307	327	0.86
Non-Cytoplasmic	328	333	0.68
Transmembrane Helix	334	354	0.96
Cytoplasmic	355	362	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQHNPENSQ SNASMSEIQS SYYRYHSRKV LFLLSVSFGI LFLVGIAASF GSYELDLVSV  60
   61 YTTIFAGIFP GMGIPESVAN TIIWDIRLPR ISMAIVCGAS LGVAGAILQG VLRNPLAEPF 120
  121 TLGISSAAAM GASLAIIGGL KLFGAYSVVL NAFISAFLAT MVIYSIAKSK GMTPEAIILA 180
  181 GIAIMFLLDA VTSFMQYLGT AEQVQAVVFW MMGSVSVANW ETVFIVFCIA VIAIPYLIYK 240
  241 ASDLTIIGAG DETAHSLGIN VEHVRMRTLI FAALLTASVT AFCGIIGFVG LVSPHITRMA 300
  301 IGGDNRYVIP GSALVGGILL LGADTVARTI LAPMILPVGI MTALVGVPFF MFLFMRKRKE 360
  361 LW