YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109098529
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	157	0.82
Transmembrane Helix	158	181	0.85
Non-Cytoplasmic	182	192	0.62
Transmembrane Helix	193	210	0.60
Cytoplasmic	211	245	0.76
Transmembrane Helix	246	265	0.94
Non-Cytoplasmic	266	281	0.67
Transmembrane Helix	282	303	0.88
Cytoplasmic	304	313	0.79
Transmembrane Helix	314	335	0.91
Non-Cytoplasmic	336	345	0.71
Transmembrane Helix	346	367	0.94
Cytoplasmic	368	378	0.75
Transmembrane Helix	379	398	0.90
Non-Cytoplasmic	399	408	0.63
Transmembrane Helix	409	427	0.72
Cytoplasmic	428	468	0.62
Transmembrane Helix	469	489	0.90
Non-Cytoplasmic	490	496	0.56
Transmembrane Helix	497	520	0.92
Cytoplasmic	521	538	0.59
Transmembrane Helix	539	563	0.86
Non-Cytoplasmic	564	573	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNSKGRSIT DKTSGGPSNG GGFVDWTLRL NTIQSDKFLN LLLSMVPVIY QKNQEDRHKK  60
   61 ANGIWQDGLS TAVQTFSNRS EQHMEYHSFS EQSFHANNGH ASSSCSQKYD DYANYNYCDG 120
  121 RETSETTAML QDEDVSSDGD EDAIVEVTPK LPKESSGIMA LQILVPFLLA GFGTVSAGMV 180
  181 LDIVQHWEVF RKVTEVFILV PALLGLKGNL EMTLASRLST AVNIGKMDSP IEKWNLIIGN 240
  241 LALKQVQATV VGFLAAVAAI ILGWIPEGKY YLDHSILLCS SSVATAFIAS LLQGIIMVGV 300
  301 IVGSKKTGIN PDNVATPIAA SFGDLITLAI LAWISQGLYS CLETYYYISP LVGVFFLALT 360
  361 PIWIIIAAKH PATRTVLHSG WEPVITAMVI SSIGGLILDT TVSDPNLVGI VVYTPVINGI 420
  421 GGNLVAIQAS RISTYLHLHS IPGELPDEPK GCYYPFRTFF GPGVNNKSAQ VLLLLVIPGH 480
  481 LIFLYTIHLM KSGHTSLTII FIVVYLFAAV LQVFTLLWIA DWMVHHFWRK GKDPDSFSIP 540
  541 YLTALGDLLG TALLALSFHF LWLIGDRDGD VGD