YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S35F5_MACFA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	33	0.90
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	175	0.87
Transmembrane Helix	176	197	0.94
Cytoplasmic	198	204	0.75
Transmembrane Helix	205	227	0.88
Non-Cytoplasmic	228	236	0.70
Transmembrane Helix	237	256	0.95
Cytoplasmic	257	267	0.79
Transmembrane Helix	268	291	0.87
Non-Cytoplasmic	292	303	0.70
Transmembrane Helix	304	320	0.72
Cytoplasmic	321	321	0.23
Transmembrane Helix	322	350	0.78
Non-Cytoplasmic	351	360	0.47
Transmembrane Helix	361	386	0.84
Cytoplasmic	387	432	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLPSTTNHS SAPLQKHLCL FCTFWALLFG SHGDNSVQED FAESMLLFFA DAEGYFAACT  60
   61 TDTTMNSSLS EPLYVPVKFH DLPSEKPEST NIDTEKTPKK SRVRFSNIME IRQLPSSHAL 120
  121 EAKLSRMSYP VKEQESILKT VGKLTATQVA KISFFFCFVW FLANLSYQEA LSDTQVAIVN 180
  181 ILSSTSGLFT LILAAVFPSN SGDRFTLSKL LAVILSIGGV VLVNLSGSEK SAGRNTIGSI 240
  241 WSLAGAMLYA VYIVMIKRKV DREDKLDIPM FFGFVGLFNL LLLWPGFFLL HYTGFEDFEF 300
  301 PNKVVLMCII INGLIGTVLS EFLWLWGCFL TSSLIGTLAL SLTIPLSIIA DMCMQKVQFS 360
  361 WLFFAGAIPV FFSFFIVTLL CHYNNWDPVM VGIRRIFAFI CRKHRIQRVP EDSEQCESLI 420
  421 SMHSVSQEDG AS