YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62320741
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALFLSPKTIT LLFFSLSLAL YCSIDPFHHC AISDFPNFVS HEVISPRPDD VPWERDSQNS  60
   61 LQKSKILFFN QIQGPESVAF DSLGRGPYTG VADGRVLFWD GEKWIDFAYT SSNRSEICDP 120
  121 KPSALSYLRN EHICGRPLGL RFDKRTGDLY IADAYMGLLK VGPEGGLATP LVTEAEGVPL 180
  181 GFTNDLDIAD DGTVYFTDSS ISYQRRNFLQ LVFSGDNTGR VLKYDPVAKK AVVLVSNLQF 240
  241 PNGVSISRDG SFFVFCEGDI GSLRRYWLKG EKAGTTDVFA YLPGHPDNVR TNQKGEFWVA 300
  301 LHCRRNYYSY LMARYPKLRM FILRLPITAR THYSFQIGLR PHGLVVKYSP EGKLMHVLED 360
  361 SEGKVVRSVS EVEEKDGKLW MGSVLMNFVA VYDL

Type	Start	End	Confidence
Cytoplasmic	1	8	0.52
Transmembrane Helix	9	28	0.52
Non-Cytoplasmic	29	394	0.99