YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67969014
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.75
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAGGGSGA DPGSRGLLRL LSFCVLLAGL CRGNSVERKI YIPLNKTAPC VRLLNATHQI  60
   61 GCQSSISGDT GVIHVVEREE DLQWVLTDGP NPPYMVLLES KLFTRDLMEK LKGRTSRIAG 120
  121 LAVSLTKPNP ASGFSPSVQC PNDGFGVYSN SYGPEFAHCR EIQWNSLGNG LAYEDFSFPI 180
  181 FLLEDENETK VIKQCYQDHN LSQNGSAPTF PLCAMQLFSH MHAVISTATC MRRSSIQSTF 240
  241 SINPEIVCDP LSDYNVWSML KPINTTGTLK PDDRVVVAAT RLDSRSFFWN VAPGAESAVA 300
  301 SFVTQLAAAE ALQKAPDVTT LPRNVMFVFF QGETFDYIGS SRMVYDMEKG KFPVQLENVD 360
  361 SFVELGQVAL RTSLELWMHT DPVSQKNDSV RNQVEDLLAT LEKSGAGVPA VILRRPNQSQ 420
  421 PLPPSSLQRF LRARNISGVV LADHSGAFHN KYYQSIYDTA ENINVSYPEW LSPEEDLNFV 480
  481 TDTAKALADV ATVLGRALYE LAGGTNFSDT VQADPQTVTR LLYGFLIKAN NSWFQSILRQ 540
  541 DLRSYLGDGP LQHYIAVSSP TNTTYVVQYA LANLTGTVVN LTREQCQDPS KVPSENKDLY 600
  601 EYSWVQGPLN SNETDRLPRC VRSTARLARA LSPAFELSQW SSTEYSTWTE SRWKDIRARI 660
  661 FLIASKELEF ITLIVGFGIL VFSLIVTYCI NAKADVLFIA PREPGAVSY

Type	Start	End	Confidence
Signal Peptide	1	33	0.78
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	669	0.98
Transmembrane Helix	670	692	0.88
Cytoplasmic	693	709	0.92