YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60550953, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.53
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEEAGEVFD NMLKASFPLT FIVFLPAVLL LVSPLQAEAA HEFTVYRMQH YDLQGQSYGT  60
   61 RNSVLNTEAR TVQADVLSRR CVLMRLADFS FEQYQKALRQ SAGAVVIILP PNMAALPQDI 120
  121 VQQFMDIEPE MLSMETQVPV YFAVEDEELL SIYEQTLAAS ASQGTSSAAE VLLHTATANG 180
  181 FQMVTSGAQS KAVSDWLVTS VEGRLTGLGA EDLPTIAIVA HYDSFGVAPW LSYGADSNGS 240
  241 GVTILLELAR LFSRLYTYKR THAGYNLLFF ASGGGKFNYQ GTKRWLEDHL DHTDSSLLQD 300
  301 NVAFVLCLDT LGNGDTLHLH VSKPPREGTL QHAFLRELEM IISSQFPEVK FSMVHKKINL 360
  361 AEDTLAWEHE RFAIRRLPAF TVSHLESHRS GHRNSILDLR WKVDTQVLAR NTRIIAEALT 420
  421 RVIYNLTEKA APSDLQIFTQ QMQVQKEQLD AVMQWLTGQP RAAQLVDKDS SLLSTLEYYM 480
  481 SRYLKDVKFY HVKADKRDPE FVFYDQLKQT MNAYRVKPAI FDLLLALCIA AYLGLSYFAV 540
  541 QNFGLLYKLV QRVSWKPKQQ

Type	Start	End	Confidence
Signal Peptide	1	39	0.69
N-region	1	30
H-region	31	36
C-region	37	39
Cleavage Site	39	40
Non-Cytoplasmic	40	522	0.88
Transmembrane Helix	523	545	0.66
Cytoplasmic	546	560	0.61