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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|62319955
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSFFLVVV AAAIGFFILF RKFRFQESNS SSLSLPSPAT SVSRNWKHDV FPSFHGADVR  60
   61 RTFLSHIKES FRRKGIDTFI DNNIERSKSI GPELKEAIKG SKIAIVLLSR KYASSSWCLD 120
  121 ELAEIMKCRE MVGQIVMTIF YEVEPTDIKK QTGEFGKAFT KTCRGKTKEH IERWRKALED 180
  181 VATIAGYHSH KWCDEAEMIE KISTDVSKDF DDFVGMAAHM ERTEQLLRLD LDEVRMIGIL 240
  241 GPPGIGKTTI ATCMFDRFSR RFPFAAIMTD IRECYPRLCL NERNAQLKLQ EQMLSQIFNQ 300
  301 KDTMISHLGV APERLKDKKV FLVLDEVGHL GQLDALAKET RWFGPGSRII ITTEDLGVLK 360
  361 AHGINHVYKV GYPSNDEAFQ IFCMNAFGQK QPCEGFCDLA WEVKALAGEL PLGLKVLGSA 420
  421 LRGMSKPEWE RTLPRLRTSL DGKIGNIIQF SYDALCDEDK YLFLYIACLF NYESTTKVKE 480
  481 LLGKFLDVKQ GLHVLAQKSL ISFYGETIRM HTLLEQFGRE TSCKQFVHHG YRKHQLLVGE 540
  541 RDICEVLDDD TRDNRRFIGI NLDLRKNEKE LKISEKTLER MHDFQFVRIN DVFTHKERQK 600
  601 LLHFKIIHQP ERVQLALEDL IYHSPRIRSL KWFGYQNICL PSTFNPEFLV ELDMSSSKLR 660
  661 KLWEGTKQLR NLKWMDLSDS EDLKELPNLS TATNLEELKL RRCSSLVELP SSIEKLTSLQ 720
  721 ILDLHSCSSL VELPSFGNAT KLEKLDLENC SSLVKLPPSI NANNLQELSL RNCSRVVELP 780
  781 AIENATNLRE LKLQNCSSLI ELPLSWVKRM SRLRVLTLNN CNNLVSLPQL PDSLDYIYAD 840
  841 NCKSLERLDC CFNNPEISLY FPNCFKLNQE ARDLIMHTST SRFAMLPGTQ VPACFIHRAT 900
  901 SGDYLKIKLK ESPFPTTLRF KACIMLVKVN EEMSYDQRSM SVDIVISVHQ AIKVQCTPSY 960
  961 HHIYPVLTEH IYTFELEVEE VTSTELVFEF ISFRGNWKIG ECGILQR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle