YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60099007, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVMTDVTAA PRLGSAATTP AVAPNFSWLP EDGSPTAVEQ PIFLMTTAAQ AISGFFVWTA  60
   61 LLITCHQIYM HLRCYSCPNE QRYIVRILFI VPIYAFDSWL SLLFFTNDQY YVYFGTVRDC 120
  121 YEAFVIYNFL SLCYEYLGGE SSIMSEIRGK PIESSCVYGT CCLWGKTYSI GFLRFCKQAT 180
  181 LQFCVVKPLM AISTVILQAF DKYQDGDFDV TSGYLYVTII YNISVSLALY ALFLFYFATR 240
  241 ELLSPYSPVL KFFMVKSVIF LSFWQGMLLA ILEKCGAIPK IHSANVSVGE GTVAAGYQDF 300
  301 IICVEMFFAA IALRHAFTYK VYADKRLDAQ GRCAPMKSIS SSLKETMNPH DIVQDAIHNF 360
  361 SPAYQQYTQQ STLEHGPPWR NGSHVISRSH SCSGARDNEK TLLLSSDDEF

Type	Start	End	Confidence
Cytoplasmic	1	8	0.68
Transmembrane Helix	9	28	0.66
Non-Cytoplasmic	29	45	0.83
Transmembrane Helix	46	66	0.87
Cytoplasmic	67	82	0.86
Transmembrane Helix	83	105	0.87
Non-Cytoplasmic	106	216	0.65
Transmembrane Helix	217	238	0.93
Cytoplasmic	239	251	0.84
Transmembrane Helix	252	272	0.86
Non-Cytoplasmic	273	294	0.85
Transmembrane Helix	295	317	0.77
Cytoplasmic	318	410	0.90