YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67970880
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPDLHGTLY LAAVQIMKCL SVGAACGLVA LWQLRRLDSG TMSGFSTEER AAPFSLEYRV  60
   61 FLKNEKGQYI SPFHDIPIYA DKDVFHMVVE VPRWSNAKME IATKDPLNPI KQDVKKGKLR 120
  121 YVANLFPYKG YIWNYGAIPQ TWEDPGHNDK HTGCCGDNDP IDVCEIGSKV CARGEIIGVK 180
  181 VLGILAMIDE GETDWKVIAI NVDDPDAANY NDINDVKRLK PGYLEATVDW FRRYKVPDGK 240
  241 PENEFAFNAE FKDKDFAIDI IKSTHDHWKA LVTKKTNGKG ISCMNTTVSE SPFKCDPDAA 300
  301 RAIVDALPPP CESACTVPTD VDKWFHHQKN

Type	Start	End	Confidence
Cytoplasmic	1	8	0.43
Transmembrane Helix	9	32	0.68
Non-Cytoplasmic	33	330	0.67