YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCHL_CHICK
Protein type:	Globular with Signal Peptide
Type Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLSASSPAA TAQSAAEPSK QHQVASPPSE CPMHQEKMRG CPMHMKASDR RAENTDDVPA  60
   61 HQERAYEYVA CPVKSGASQV NDDIDPSNMM PPPNQLPSPD QPFPLSTVRE ESSIPRAHSD 120
  121 KKWVYPSEQM FWNAMLRKGW RWKDDDITSE DMTNIIKIHN QNNEQAWKEI LKWEALHAME 180
  181 CPCGPSLMRF GGKAKEYSPR ARIRSWMGYE LPFDRHDWIV DRCGKEVRYV IDYYDGGAVD 240
  241 KNYQFTILDV RPAFDSLSAV WDRMKVAWWR WTS

Type	Start	End	Confidence
Signal Peptide	1	16	0.66
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	273	0.99