YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLCD_MACFA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLAGLLKSQ FLCHLVFCYV FIASGLIINT VQLFTLLLWP INKQLFRKIN CRLSYCISSQ  60
   61 LVMLLEWWSG TECTIFTDPR AYPKYGKENA IVVLNHKFEI DFLCGWSLSE RFGLLGGSKV 120
  121 LAKKELAYVP IIGWMWYFTE MVFCSRKWEQ DRKTVATSLQ HLRDYPEKYF FLIHCEGTRF 180
  181 TEKKHEISMQ VARAKGLPRL KHHPLPRTKG FAITVRSLRN VVSAVYDCTL NFRNNENPTL 240
  241 LGVLNGKKYH ADLYVRRIPL EDIPEDDDRC SAWLHKLYQE KDAFQEEYYR TGTFPETPMV 300
  301 PPRRPWTLVN WLFWASLVLY PFFQFLVSMI RSGSSLTLAS FILVFFVASM GVRWMIGVTE 360
  361 IDKGSAYGNS DSKQKQND

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.59
Transmembrane Helix	15	39	0.84
Cytoplasmic	40	306	0.72
Transmembrane Helix	307	327	0.90
Non-Cytoplasmic	328	335	0.61
Transmembrane Helix	336	357	0.91
Cytoplasmic	358	378	0.83