YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71834636, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQNVSCRE QISVSGGSPT IPAFMFSTGV LGNVVALILL EMRRRKQPAS LFHVLVSSLV  60
   61 ITDLLGTFSL SPLVLTAYFR NASLLGMNEN RLACGHFAYA MTFFSVVTLA ILLSMAVERW 120
  121 LSIGHPFFYE KYSSKRCGYI TIALIYLLCA LFCVTPFLGF GKYVQYCPGT WCFIDMDPSA 180
  181 SEHKAFNIIY ASCLLLMIVC TVLCNASVIY HISRMYRRLK AHRSSVRRQR GHKRHRSMTK 240
  241 EVEHLVLLWF MTIAFVFCSL PLVIQVYHNT LYHRDRHRNN VIPLLFLSAN PIIDPWVFII 300
  301 LSPPVPRLLW DKICKAAKSK PIREKVHSIH PVLYHSSPPA D

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.94
Transmembrane Helix	21	40	0.95
Cytoplasmic	41	50	0.88
Transmembrane Helix	51	75	0.86
Non-Cytoplasmic	76	95	0.88
Transmembrane Helix	96	117	0.93
Cytoplasmic	118	136	0.94
Transmembrane Helix	137	160	0.92
Non-Cytoplasmic	161	187	0.95
Transmembrane Helix	188	210	0.95
Cytoplasmic	211	244	0.94
Transmembrane Helix	245	264	0.97
Non-Cytoplasmic	265	291	0.74
Transmembrane Helix	292	310	0.71
Cytoplasmic	311	341	0.90