YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPAT3_RAT
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGTDLVVKL LSTWLTLVGS LILLPSAFGL SLGISEIYMK ILVKTLEWAT LRIEKGAPKE  60
   61 SVLKSPASMG IIQRDESPME KGLSGLRGRD FELSDVFYFS KKGLEAIVED EVTQRFSSEE 120
  121 LVSWNLLTRT NVNFHYISPK LTIVWVLGVL VRYCFLLPLR VTLAFIGISL LIIGTTLVGQ 180
  181 LPDSSLKNWL SELVHLTCCR ICVRSLSGTI HYHNKQYRPQ KGGICVANHT SPIDVLILAT 240
  241 DGCYAMVGQV HGGLMGIIQR AMVKACPHVW FERSEIKDRH LVTKRLKEHI ADKKKLPILI 300
  301 FPEGTCINNT SVMMFKKGSF EIGGTIYPVA IKYNPQFGDA FWNSSKYNLV SYLLRIMTSW 360
  361 AIVCDVWYMP PMTREEGEDA VQFANRVKSA IAVQGGLTEL PWDGGLKRAK VKDTFKEEQQ 420
  421 KTYSKMIVGN GSPSLALDSS TVDNHGSPEP AFRSESL

Type	Start	End	Confidence
Cytoplasmic	1	9	0.38
Transmembrane Helix	10	34	0.64
Non-Cytoplasmic	35	135	0.59
Transmembrane Helix	136	156	0.58
Cytoplasmic	157	160	0.58
Transmembrane Helix	161	181	0.84
Non-Cytoplasmic	182	457	0.79