YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIPF6_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEAEDSPGE QEATSSKPLF AGLSDVSISQ DIPIEGEITI PSGTRAQECD SSTLNESIRR  60
   61 TIMRDLKAVG RKFMHVLYPR KSNTLLRDWD LWGPLILCVS LALMLQKSSV EGKRDGGSPE 120
  121 FAEVFVIIWF GAVTITLNSK LLGGNISFFQ SLCVLGYCVL PLNIAMLICR LLLLAGQGPI 180
  181 NFMIRLFVVL VMFAWSVIAS TAFLADCQPP NRKALAVYPV FLFYFVVSWM ILTFTP

Type	Start	End	Confidence
Cytoplasmic	1	88	0.91
Transmembrane Helix	89	106	0.85
Non-Cytoplasmic	107	120	0.72
Transmembrane Helix	121	142	0.84
Cytoplasmic	143	152	0.64
Transmembrane Helix	153	174	0.93
Non-Cytoplasmic	175	181	0.75
Transmembrane Helix	182	205	0.91
Cytoplasmic	206	213	0.80
Transmembrane Helix	214	233	0.95
Non-Cytoplasmic	234	236	0.64