YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55778022, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELRQRGAT DKELKHQHSE DKGSETEGKE RDGASDSETK PEVPVSADDT PEVLNKALSG  60
   61 LSSRWKNWWV RGILTLAMIS FFFFIIYLGP MVLMMIVLCV QIKCFQEIIT IGYSVYHSYD 120
  121 LPWFRTLSWY FLLCVNYFFY GETVTDYFFT LVQREEPLRI LSKYHRFISF ALYLTGFCMF 180
  181 VLSLVKKHYR LQFYMFGWTH VTLLIVVTQS HLIIHNLFEG MIWFIVPISC VICNDIMAYM 240
  241 FGFFFGRTPL IKLSPKKTWE GFIGGFFSTI VFGILLSYVM AGYSYFVCPV EFNNDSNRFT 300
  301 VDCQPSELFQ LQDYSLPSVL QSITGWTTVK LYPFQIHSIA LSSFASIMGP FGGFFASGFK 360
  361 RAFKIKDFAN TIPGHGGIMD RFDCRYLMAT FVNVYIASFI RGPNPSKVIQ QLLALRPDQQ 420
  421 LHIFNSLKAH LTEKGLLPAL EEAA

Type	Start	End	Confidence
Cytoplasmic	1	67	0.91
Transmembrane Helix	68	88	0.91
Non-Cytoplasmic	89	93	0.65
Transmembrane Helix	94	116	0.62
Cytoplasmic	117	122	0.62
Transmembrane Helix	123	141	0.73
Non-Cytoplasmic	142	166	0.77
Transmembrane Helix	167	185	0.94
Cytoplasmic	186	193	0.79
Transmembrane Helix	194	214	0.86
Non-Cytoplasmic	215	221	0.83
Transmembrane Helix	222	245	0.92
Cytoplasmic	246	260	0.90
Transmembrane Helix	261	282	0.91
Non-Cytoplasmic	283	335	0.95
Transmembrane Helix	336	356	0.94
Cytoplasmic	357	444	0.83